Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2793g00015 ATGTCCGTACAATCGACCCTGAAGCTAGCAACTGCAAGTTCCGATTTTGAGGGTGACCCACCATGCAAAACCACCAGAAAAACCCAACCACAGAAGAGGGTCCTTCGGATCATACTCACTGACCATGACGCCACTGATTCCGACTCTTCCGGCGATGATGAACTGCCAGAAAACCCATCAAGGCTTCGAAGAGTGAAGAAAAAAATCACACATATCAACATGCACCTTCCCTTATTCACAAACTCTCCAAAATCTTCACCATCTTCCTCTTCTTCTTTCCCTGACCCGACCCGTTTCAAAAAACCCAAGAAATCGCCAGCCGACGGCGCCTCCTCTCGCCGCCGTAGCAAGTTTAGGGGCGTTCGCCAGAGGCCTTGGGGACGGTGGACTGCCGAGATCCGAGACCCGACCCGTCGGAAACGGGTCTGGCTAGGGACCTTCGACACGGCGGAGGAAGCCGCCGCGGTGTACGACGAGGCCGCCGTAAAGCTTAAGGGTCAAAACGCCATCACCAACTTCCCCCGCAACGGAGCCGCGAAGACGGAGGAGGACACGGCGGCGGTTGTTTTCCCCGGCGACGGATTTGCGTCGCCGACGTCTGTCCTGGCACACTACGGCGGCGATTCGACTCCGTTCGACGGTTTTCGTTACGGTGCGGTGGATGCCTTCGGTTTTGATATCGACGTGCCGTTAAGTCTGACGGACGTTAACTCGGTGGTGCTGAGTCAGCGATTTGGGAAAGAAGAGTTCGGCGAGTTTGACCCGGACGATTTCTTGACTTGGCCCAGTTAA 792 0.5568 MSVQSTLKLATASSDFEGDPPCKTTRKTQPQKRVLRIILTDHDATDSDSSGDDELPENPSRLRRVKKKITHINMHLPLFTNSPKSSPSSSSSFPDPTRFKKPKKSPADGASSRRRSKFRGVRQRPWGRWTAEIRDPTRRKRVWLGTFDTAEEAAAVYDEAAVKLKGQNAITNFPRNGAAKTEEDTAAVVFPGDGFASPTSVLAHYGGDSTPFDGFRYGAVDAFGFDIDVPLSLTDVNSVVLSQRFGKEEFGEFDPDDFLTWPS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2793g00015 263 Pfam AP2 domain 116 166 IPR001471 GO:0003700|GO:0006355
Gabi2793g00015 263 SUPERFAMILY DNA-binding domain 116 175 IPR016177 GO:0003677
Gabi2793g00015 263 MobiDBLite consensus disorder prediction 1 123 - -
Gabi2793g00015 263 FunFam Ethylene-responsive transcription factor 2 116 175 - -
Gabi2793g00015 263 MobiDBLite consensus disorder prediction 97 115 - -
Gabi2793g00015 263 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Gabi2793g00015 263 MobiDBLite consensus disorder prediction 75 96 - -
Gabi2793g00015 263 CDD AP2 116 174 IPR001471 GO:0003700|GO:0006355
Gabi2793g00015 263 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 182 - -
Gabi2793g00015 263 PIRSF PTI6 1 263 IPR017392 GO:0003700
Gabi2793g00015 263 Gene3D AP2/ERF domain 116 175 IPR036955 GO:0003700|GO:0006355
Gabi2793g00015 263 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Gabi2793g00015 263 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Gabi2793g00015 263 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2793g00015 Gabi-Chr2793 200832 202370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2793g00015 33 204 AP2-EREBP Transcription Factor Family AT4G27950 40.957 2.66e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2793g00015 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2793g00015 K13434 - gmx:102660028 350.517