Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2793g00013 ATGAAGGCCAGCAAATTGTACTCTGAATTCAATTGTCAATATCTTATACCTTACATCAAACAACAACTCTCCATGAAGTTCAATTCTACTTCAGTGGCTCCATTCCTTTTTGTCATAATTATTCTTTTTCCCCTGGCTATTGCTGACCTGAGTTCAGATAGGCAAGCCCTTCTTGATTTTGCTAATGCTGTCCCCCACCGTAGGAACTTTATGTGGAATCCATCCACCTCAATGTGTACATCTTGGGCAGGCATCATTTGCAATCAAAATGGAACTCGTGTTATTTCTGTCCGGCTCCCCGGAGTTGGACTACTAGGCTCAATCCCATCCAATACACTTGGAAAGCTTGATGCTGTGAAAACAATTAGCCTTAGATCCAACCTACTCACTGGAACTCTGCCTGCTGACATTGCTTCTCTTCCTTCTCTCCAGCATCTCTATCTCCAGCATAATAACCTTTCTGGTGATATACCTGCCTCATTGTCTCCCCAACTCATTGTACTAGATTTGTCATATAATTCCTTCACTGGTGGCATTCCAAAGACATTACAAAACTTGACAGAATTAACTAGTTTGAATCTCCAGCACAACTCCCTATCTGGACAGATACCTAATCTCAATGTTACTAAGCTCAGGCTCTTGAATTTGAGCTACAACAATTTGAATGGCTCTATCCCAGCAGCTCTTCAGATTTTTCCTAACTCGTCCTTTGAGGGAAACTCTCATTTATGTGGACCACCTCTAAAGCCGTGCTCAGTGATTCCCCCTACACCTTCTCCTTTCTTGACTCCACCTCCACCATCAGCTCCTGGAAGACAAAGCTCTAAAAGTAAATTGAGTAAGGTAGCTATCATTGCAATTGCGGTTGGAGGAGCTGTATTGCTATTTTTTGTAGCTCTTGTTATTGTTCTTTGCTGTTTAAAGAAGAAAGATGCGAGAGGGTCCAATGTAAGTAAAGAGAAGGGTCCTAGTGGTGGTAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTGCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTAGAGGATTTGCTGAGAGCTTCGGCCGAAGTTCTGGGAAAGGGTAGTTATGGTACTGCATATAAGGCTATATTAGAGGAGTCAATGACAGTTGTGGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAGGGACTTCGAACAGCAGATGGAGATTATGGGGAGGGTTGGACAACACCCAAATGTTGTGCCACTTCGAGCTTATTATTATTCAAAAGATGAAAAGCTTTTGGTTTATGATTATGTTCCTGGTGGAAACCTATCCACACTCTTGCATGGCAGTAGGACAGGTGGAAGAACTCCCATAGATTGGGACACCAGAATAAAAATATCCCTTGGAACTGCAAGGGGAATTGCTCACATACATTCTGTTGGAGGTCCCAAATTCACACATGGAAACATTAAGGCCTCAAATGTCCTCCTCAACCAAGATAATGATGGTTGTATTTCTGACTTTGGCCTGACGCCACTTATGAATGTTCCTGCAACCCCTTCTAGAGCTGCAGGTTATCGTGCTCCCGAGGTGATTGAAACTCGGAAGCACACTCATAAATCAGATGTGTACAGCTTTGGTGTCCTCCTTTTGGAGATGCTTACTGGTAAAGCGCCTCTCCAATCTCCAGGACGTGATGATATGGTTGATCTTCCTAGGTGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCAATGACCTGTGTGGCTAAGATGCCAGATATGAGACCAAGCATGGATGAAGTAGTGAAAATGATTGAAGAGATCAGGCAATCTGACTCAGAGAACCGACCATCTTCTGAAGAGAATAAATCCAAGGACTCAAATGTTCAAACTCCATAG 1980 0.4298 MKASKLYSEFNCQYLIPYIKQQLSMKFNSTSVAPFLFVIIILFPLAIADLSSDRQALLDFANAVPHRRNFMWNPSTSMCTSWAGIICNQNGTRVISVRLPGVGLLGSIPSNTLGKLDAVKTISLRSNLLTGTLPADIASLPSLQHLYLQHNNLSGDIPASLSPQLIVLDLSYNSFTGGIPKTLQNLTELTSLNLQHNSLSGQIPNLNVTKLRLLNLSYNNLNGSIPAALQIFPNSSFEGNSHLCGPPLKPCSVIPPTPSPFLTPPPPSAPGRQSSKSKLSKVAIIAIAVGGAVLLFFVALVIVLCCLKKKDARGSNVSKEKGPSGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKRDFEQQMEIMGRVGQHPNVVPLRAYYYSKDEKLLVYDYVPGGNLSTLLHGSRTGGRTPIDWDTRIKISLGTARGIAHIHSVGGPKFTHGNIKASNVLLNQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKMPDMRPSMDEVVKMIEEIRQSDSENRPSSEENKSKDSNVQTP 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2793g00013 659 Gene3D Ribonuclease Inhibitor 207 252 IPR032675 -
Gabi2793g00013 659 Gene3D Transferase(Phosphotransferase) domain 1 440 658 - -
Gabi2793g00013 659 MobiDBLite consensus disorder prediction 633 650 - -
Gabi2793g00013 659 PANTHER OS05G0588300 PROTEIN 36 647 - -
Gabi2793g00013 659 MobiDBLite consensus disorder prediction 314 339 - -
Gabi2793g00013 659 FunFam pollen receptor-like kinase 1 332 439 - -
Gabi2793g00013 659 ProSiteProfiles Protein kinase domain profile. 364 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2793g00013 659 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 440 647 - -
Gabi2793g00013 659 Gene3D Ribonuclease Inhibitor 50 206 IPR032675 -
Gabi2793g00013 659 CDD STKc_IRAK 370 635 - -
Gabi2793g00013 659 MobiDBLite consensus disorder prediction 255 271 - -
Gabi2793g00013 659 Pfam Protein kinase domain 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2793g00013 659 SUPERFAMILY L domain-like 52 251 - -
Gabi2793g00013 659 SUPERFAMILY Protein kinase-like (PK-like) 368 642 IPR011009 -
Gabi2793g00013 659 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Gabi2793g00013 659 Pfam Leucine Rich Repeat 210 230 IPR001611 GO:0005515
Gabi2793g00013 659 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
Gabi2793g00013 659 Pfam Leucine rich repeat 163 199 IPR001611 GO:0005515
Gabi2793g00013 659 Pfam Leucine rich repeat 105 153 IPR001611 GO:0005515
Gabi2793g00013 659 ProSitePatterns Protein kinases ATP-binding region signature. 370 401 IPR017441 GO:0005524
Gabi2793g00013 659 Gene3D Phosphorylase Kinase; domain 1 332 439 - -
Gabi2793g00013 659 FunFam Leucine-rich repeat receptor-like protein kinase 52 162 - -
Gabi2793g00013 659 FunFam Leucine-rich repeat receptor-like protein kinase 163 251 - -
Gabi2793g00013 659 MobiDBLite consensus disorder prediction 633 659 - -
Gabi2793g00013 659 MobiDBLite consensus disorder prediction 255 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2793g00013 Gabi-Chr2793 177092 180675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2793g00013 9 657 Receptor kinase-like Gene Family AT5G58300 66.260 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2793g00013 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2793g00013 - - gmx:100796171 1121.3