Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2793g00007 ATGTATCTTTCAAAGGGTTATAAGCATGGAGTTGTTTTCATCTTGTGGTTCTGCTACTATTTGCTACTGGCTGCTGCGCAGGGTAATATCACTAGCGACACTGAAGTTAAAGCATTGCAAGCCATAAAGGAAAGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGAATAGCGGAGACCCATGTACATCTAATTGGACTGGAGTTTTATGCTTCAATGAAACGAAAGCGGATGGCTATCTACATGTTCGAGAATTGCAACTACTGAATTTGAACTTGTATGGAACTTTGGCACCAGATATTGGCAACTTATCTTATATGGAAATATTGGACTTTATGTGGAACAACATAACTGGGAGTATTCCAAAGGAAATTGGCAATATCAAATCTTTGCAACTCTTGCTCCTGAATGGAAATCAATTAACAGGTTCGCTGCCAGAGGAGCTTGGCTATCTTCCGGTCCTAAATAGAATACAAATCGACCAGAACCATATATCAGGACCTATACCACCATCATTTGCAAACCTGAACTTGACAAAGCACTTTCACATGAACAATAATTCACTTAGCGGGCAAATCCCACCGGAGCTCTCCCGATTACCAAGCCTTGTTCATCTCCTTCTTGACAACAACAACTTATCAGGATATCTTCCACCCGAGCTATCCAACTTGCCAAGCTTACTTATACTACAACTTGATAACAATAACTTTGGCGGAAATAGCATTCCAGATACTTATAGCAACATGTCAAAATTGTTGAAGATGAGCCTTAGGAATTGCAGCTTGCAAGGACCAATTCCCGATTTAAGCAAGATACCATACCTTTATTATCTTGACCTGAGTTCCAATCAGTTGAATGGATCGATTCCTCGCAATAAGCTTTCTGAAAATATCACAACCATTGATTTATCAAACAACAAGCTTACTGGACCTATTCCGTCCTACTTTTCTGGTCTTCCACGTCTTCAGAGATTGTTACTTTCAAACAATTCATTGAATGGCAGTGTTCCTTCCATCATTTGGCAGAACAAGACTTTAAATGGAACAGAAAAATTTCTCTTGGAGCTGGAAAATAATAAACTTACAAACATATCAGGCAGTACTAATCTTCCTCCCAATGTCACAGTCTTGCTTCATGGGAATCCTGTATGCTCAAATAAATCCCTGGTTCAGTTATGTGGATCTGAAGGTGCTAATGACACAAATGACTTATTTCAAACAAACTTCATTGGTTCCTGTCCACCACAAGCATGCCCACCTCCTTATGAATACTCTGTGGATTGTTTCTGTGCGGTACCATTGCTGGTTGGTTATCGGCTGAAAAGTCCGGGATTTAAAGAATTTGGTCCATACGTGGATAGATTTCAGAACTACTTGACTTCTGGTCTTCAAATATATACCAGTCAGCTACAATTTACTTTTTATTGGCAAGAGGGACCTCGACTAAGAATGGACTTGAAGCTTTTTCCTATATATGTCGATAACAGTAGTGCTCATACGTTCAATGGAAGTGAGGTCCAAAGGATCAGAAGCATGTTCACTGGATGGAACATTCCAGACGATGATTTGTTTGGGCCTTATGAACTGATTAACCTCACTCTTGTGGGTCCGTATGCAGAATTCGCTGGCACCTCTTCCAAATCAGGGATAAGTACTGGCGCACTGGTTGGCATAATCTTAGGGTCAGTTGCCTGTGCAGTGACGTTATCTGCAATTGTTACTCTTCTTATATTGAGAACACAATTGAGAGATCATCGCGCTCTTTCCAAAAGACGTCACGTGTCTAAGATCTCAATAAAAATTGATGGTGTAAAGGCCTTTACTTACGGAGAAATGTCCTCCGCTACAAACAATTTTAGCAGCTCTGCTCAAGTTGGACAAGGAGGCTATGGAAAGGTTTATAAAGGTATTCTTACTGATGGCACAGTTGTTGCTATAAAACGTGCACAGGAAGGATCACTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCGTTACTATCAAGGTTACATCATCGCAACCTTGTGTCTCTCCTCGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCGAATGGCACACTAAGGGATCACCTATCCATTACATCAAAAGAAGCTCTGACTTTTGCCATGAGAGTGAAGATTGCGCTAGGGTCAGCTAAAGGTCTAATGTATCTACACACAGAAGCTGATCCTCCAATATTTCACCGAGATGTCAAGGCCAGCAACATATTGTTGGATCCAAAGTTATCTGCAAAAGTGGCTGATTTTGGACTCTCGCGGCTTGCTCCAGTTCCAGATATTGAAGGAATCGTGCCTGGTCACGTATCTACTGTGGTAAAAGGGACCCCGGGTTACCTTGATCCAGAATACTTCTTAACTCACAAGTTGACCGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTTTGACTGGGATGCAACCTATCTCCCATGGCAAAAATATTGTTAGAGAGGTTAATGTTGCATACCAATCCGGGGTGATATTTTCAGTTATTGATGGACGCATGGGGTCTTATCCATCTGAAATTGTGGAGAGATTTTTGACTTTGGCCCTTAAGTGTTGCAACGACGAGCCAGATGCGCGGCCTAAAATGTCAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCTATGATGCCGGATTCAGATACCAAGAGAGCTGAATCTATAACCAGTGATTCTGGAAAAATGGCCAGTACTCCATCTTCATCCTCTGCTATAAAGACTCCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAACCAAGATAG 2847 0.4106 MYLSKGYKHGVVFILWFCYYLLLAAAQGNITSDTEVKALQAIKESLIDPNGNLSNWNSGDPCTSNWTGVLCFNETKADGYLHVRELQLLNLNLYGTLAPDIGNLSYMEILDFMWNNITGSIPKEIGNIKSLQLLLLNGNQLTGSLPEELGYLPVLNRIQIDQNHISGPIPPSFANLNLTKHFHMNNNSLSGQIPPELSRLPSLVHLLLDNNNLSGYLPPELSNLPSLLILQLDNNNFGGNSIPDTYSNMSKLLKMSLRNCSLQGPIPDLSKIPYLYYLDLSSNQLNGSIPRNKLSENITTIDLSNNKLTGPIPSYFSGLPRLQRLLLSNNSLNGSVPSIIWQNKTLNGTEKFLLELENNKLTNISGSTNLPPNVTVLLHGNPVCSNKSLVQLCGSEGANDTNDLFQTNFIGSCPPQACPPPYEYSVDCFCAVPLLVGYRLKSPGFKEFGPYVDRFQNYLTSGLQIYTSQLQFTFYWQEGPRLRMDLKLFPIYVDNSSAHTFNGSEVQRIRSMFTGWNIPDDDLFGPYELINLTLVGPYAEFAGTSSKSGISTGALVGIILGSVACAVTLSAIVTLLILRTQLRDHRALSKRRHVSKISIKIDGVKAFTYGEMSSATNNFSSSAQVGQGGYGKVYKGILTDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLLGYCDEEGEQMLVYEFMSNGTLRDHLSITSKEALTFAMRVKIALGSAKGLMYLHTEADPPIFHRDVKASNILLDPKLSAKVADFGLSRLAPVPDIEGIVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGVIFSVIDGRMGSYPSEIVERFLTLALKCCNDEPDARPKMSEVVRELENIWSMMPDSDTKRAESITSDSGKMASTPSSSSAIKTPFVSGDVSGSDLVSGVIPSIKPR 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2793g00007 948 SUPERFAMILY Protein kinase-like (PK-like) 604 904 IPR011009 -
Gabi2793g00007 948 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Gabi2793g00007 948 SMART LRR_typ_2 319 343 IPR003591 -
Gabi2793g00007 948 SMART LRR_typ_2 200 223 IPR003591 -
Gabi2793g00007 948 SMART LRR_typ_2 128 152 IPR003591 -
Gabi2793g00007 948 SMART LRR_typ_2 224 248 IPR003591 -
Gabi2793g00007 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Gabi2793g00007 948 FunFam Leucine-rich repeat protein kinase family protein 583 694 - -
Gabi2793g00007 948 MobiDBLite consensus disorder prediction 899 927 - -
Gabi2793g00007 948 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Gabi2793g00007 948 CDD STKc_IRAK 625 891 - -
Gabi2793g00007 948 Pfam Protein kinase domain 621 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2793g00007 948 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Gabi2793g00007 948 Gene3D Ribonuclease Inhibitor 30 296 IPR032675 -
Gabi2793g00007 948 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 695 905 - -
Gabi2793g00007 948 Gene3D Transferase(Phosphotransferase) domain 1 695 912 - -
Gabi2793g00007 948 ProSiteProfiles Protein kinase domain profile. 619 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2793g00007 948 Gene3D Phosphorylase Kinase; domain 1 581 694 - -
Gabi2793g00007 948 SUPERFAMILY L domain-like 45 393 - -
Gabi2793g00007 948 MobiDBLite consensus disorder prediction 907 927 - -
Gabi2793g00007 948 Gene3D Ribonuclease Inhibitor 297 384 IPR032675 -
Gabi2793g00007 948 SMART serkin_6 619 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2793g00007 948 PANTHER RECEPTOR-LIKE PROTEIN 55 42 892 - -
Gabi2793g00007 948 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2793g00007 Gabi-Chr2793 77499 88958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2793g00007 18 901 Receptor kinase-like Gene Family AT5G01950 59.711 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gabi2793g00007 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2793g00007 - - gmx:100786467 1460.66