Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2792g00002 ATGTCCACTATTCAGATGTCTCATGTGGATTTGGAGCAAGGAAGAAGTCACCACCGTTCTGTGACTGGAAGTGATGTGAGTGTGTGCTTCTCTGATGCTGATGATGGTTCCTGCTATTCCCATTTCTATTCAACAAATGGTGGTTCATATGATGATTACAACTTTGATTGTGGTTCTGATCCTGAGGTTGGGGGTGATGCTGATTTTGGGAGGGCTTCTTCTGTTACTGATTGTTCTGTGGAGGTGGAAATTGAAAATGGGGTTCCTGAAATTAAAGTGCATTTGGCTAAAGTGGAGAGGAATTGTAGGATTTGTCACCTGGGTTTGGAGAGTGATAGTCAGGAATCTGGAGTTCCCATTGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCTCACAAGAACTGTGCAGAAACCTGGTTCAAGATTAAGGGGAATAGGACTTGTGAAATTTGTCATTCTGTTGCACAGAATGTTTATGGTGGAAATGAGGACACAACAGAGACTTTGAGTGACAGCAACAATGCTACTGCAGCACCAGCAGTCTCAACACCTTCTCCTTCATCAGAAACTAGAAGATTTTGGCATGGCCATCGCTTCCTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTGCCACCATCATCTTAA 684 0.424 MSTIQMSHVDLEQGRSHHRSVTGSDVSVCFSDADDGSCYSHFYSTNGGSYDDYNFDCGSDPEVGGDADFGRASSVTDCSVEVEIENGVPEIKVHLAKVERNCRICHLGLESDSQESGVPIELGCSCKDDLAAAHKNCAETWFKIKGNRTCEICHSVAQNVYGGNEDTTETLSDSNNATAAPAVSTPSPSSETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPPSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2792g00002 227 SUPERFAMILY RING/U-box 99 157 - -
Gabi2792g00002 227 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Gabi2792g00002 227 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Gabi2792g00002 227 PANTHER ZINC FINGER, RING-CH-TYPE 16 225 - -
Gabi2792g00002 227 CDD RING_CH-C4HC3_MARCH 102 154 - -
Gabi2792g00002 227 MobiDBLite consensus disorder prediction 164 190 - -
Gabi2792g00002 227 SMART ringv_2 101 154 IPR011016 GO:0008270
Gabi2792g00002 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2792g00002 Gabi-Chr2792 23684 26357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2792g00002 68 226 C3H Transcription Factor Family AT5G05830 60.625 1.67e-66 202