Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2792g00001 ATGGAACCTGAAGAAACCAACACCGCCGTCGATGCTGACGTAAGCGGAGATGAAGGGTTGCTCGGGTTAGGTGAAGGAGGTGGCAGTGGCGGCGGCGACGGCGGTGGTAGCGGTAGGGACAGAGTGAAGGGTCCTTGGTCACCGGAAGAAGACGCCATTTTAAGCCGCCTCGTCAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCTCGCGGGATCGCCGGAAGATCCGGCAAATCTTGCCGGCTCCGGTGGTGCAATCAGCTTGACCCTGCCGTTAAGCGCAAGCCCTTCACTGATGAGGAGGACCGGATCATAGTTTCTGCTCATGCAGTCCACGGGAACAAATGGGCAGCCATTGCCAGACTTCTACCAGGAAGAACTGATAATGCCATTAAGAACCACTGGAATTCCACTTTGAGGCGCCGGGGAGTTGAACTTGATAAGATTAGGCTAGAATCTGGTAACATAGTGGATGATGTTAGCTTGGACAAAGCCAAAGCATCATCTGAAGAGACTCTATCTTGTGGAGATGTTAATTCCTTGAAATCCTCTGAAGGAAGGGATGTCAGTTCTGTGGAGATCATGGACGATAAATATGAAGACAAAGCACGGACTGAGGGTCAATTATACCATGAAGCCAAGGATCCACCTACCCTTTTTCGGCCAGCAGCACGTGTAAGTGCTTTTAGTGTATATCCCTCTTTTGAAGGTTTACAGCCTTCAACATCAATTCAAAGGCCTGTTCCAATGCAAGGACCCATTTTGCAATCATCAAAACCAGATATTGAATTTTTAAAAATGGTTGAAGGGATTTATGGTGACCGTTCTGTACCTCACCAGTGCGGCCATGGTTGCTGTGCTGTTCCAAATGATAAAGGGTACAAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCAGAACCCCCATCTTTCCCTAGTTTTGAGTTGGCTGCAATAGCTACTGACATTAGCAGCCTTGCTTGGATTAAAAGTGGGTTGGAGAGTAGTAGCGTCAAAGTGATGGGTGACACAGCTGGCAGGGTAATATCTAATGAATCTCAAGTACATATTGGCCATTAA 1086 0.4807 MEPEETNTAVDADVSGDEGLLGLGEGGGSGGGDGGGSGRDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVSAHAVHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIRLESGNIVDDVSLDKAKASSEETLSCGDVNSLKSSEGRDVSSVEIMDDKYEDKARTEGQLYHEAKDPPTLFRPAARVSAFSVYPSFEGLQPSTSIQRPVPMQGPILQSSKPDIEFLKMVEGIYGDRSVPHQCGHGCCAVPNDKGYKSSLLGPEFIEFSEPPSFPSFELAAIATDISSLAWIKSGLESSSVKVMGDTAGRVISNESQVHIGH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2792g00001 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 144 IPR017930 -
Gabi2792g00001 361 SUPERFAMILY Homeodomain-like 40 136 IPR009057 -
Gabi2792g00001 361 Gene3D - 97 143 - -
Gabi2792g00001 361 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Gabi2792g00001 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 93 IPR017930 -
Gabi2792g00001 361 ProSiteProfiles Myb-like domain profile. 38 89 IPR001005 -
Gabi2792g00001 361 FunFam Transcription factor MYB44 97 143 - -
Gabi2792g00001 361 FunFam MYB transcription factor 43 94 - -
Gabi2792g00001 361 MobiDBLite consensus disorder prediction 1 46 - -
Gabi2792g00001 361 Pfam Myb-like DNA-binding domain 46 103 - -
Gabi2792g00001 361 CDD SANT 45 87 IPR001005 -
Gabi2792g00001 361 Gene3D - 42 94 - -
Gabi2792g00001 361 SMART sant 94 142 IPR001005 -
Gabi2792g00001 361 SMART sant 42 91 IPR001005 -
Gabi2792g00001 361 PANTHER MYB PROTEIN-RELATED 43 187 - -
Gabi2792g00001 361 CDD SANT 97 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2792g00001 Gabi-Chr2792 11197 14618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2792g00001 32 361 MYB Transcription Factor Family AT3G09230 52.941 3.64e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2792g00001 Myb_DNA-bind_6 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2792g00001 K09422 - gmx:100813406 553.518