Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2791g00027 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATTTCGGGTCCCAACGGCGGTGCTGCTGCTGCTGCCGCTGCCGCTGCGGCGGCTGCTGCCGGTGGAAACCAATTCGTGACGACGTCGCTTTACGTTGGAGATCTGGACCCGAATGTCACGGATTCGCAGCTCTATGACCTGTTCAACCAATTGGGTCAGGTTGTGTCTGTTAGGGTTTGCAGGGACTTGACCACCCGAAGATCGCTCGGTTATGGTTACGTCAACTATAGCAACCCACAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAAGCCCATCCGTATTATGTATTCACACCGTGATCCCAGTATCCGCAAAAGTGGGGCAGGAAATATATTTATTAAGAATTTGGACAGGGCTATTGATCACAAGGCATTATATGATACCTTCTCTACATTTGGGAATATCCTTTCTTGCAAGGTAGCTACGGATTCATCTGGACAATCAAAAGGCTATGGCTTTGTACAATTTGATAATGAGGAAGCTGCTCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAACAAGTGTATGTTGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGGTTCAATGGATAAGGCAAAATTTAACAATGTTTTTGTCAAGAACCTATCAGAATCAACCACCGATGATGAATTGAAGAGTGTTTTTGGTGAATTTGGACCAATTACTAGTGCTGTAGTGATGAGAGATGGGGATGGGAAATCAAAGTGCTTTGGATTTGTAAACTTTGAGAATGCTGATGATGCTGCTAGAGCTGTTGACGCTCTTAATGGCAAAAAATTTGATGACAAAGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGAACGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCATTAGTGATGATAAACTTAAGGAGCTGTTTTCCCCTTTTGGTACCATTACCTCTTGCAAGGTCATGAGAGACCCCAACGGCATAAGTCGAGGATCAGGGTTTGTGGCATTCTCAACTCCTGAAGAGGCATCTAGAGCACTCTTGGATATGAATGGGAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTGGCCCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTGCTCAAATGCGTCCTGTAGCAATGGCACCATCTGTTGCTCCTCGTGTGCCAATGTATCCCACTGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGTTATCAACAACAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCTGTCCCAAATTTCTTTGTGCCAATGGTTCAACAGGGGCAACAGGGGCAGCGTCCTGGTGGAAGACGTTCAGGTGCAGTTCAGCAGTCCCAGCAGCCAGTTCCACTTATGCCGCAGCAGATGCTTCCTAGGGGGCGTGTGTATCGTTATCCTCCTGGTAGGGGTATTCCTGATGTTCCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTGAGTGGGATGCCGCTGCGTGATGCAGCAATCTCCCAGCAAATTCCTATTGGGGCTTTGGCTTCTGCTCTGGCAAATTCTGCTCCCGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCTCTTGTCGAACAGTTGGAGCCTGATAATGCTGCCAAAGTGACAGGCATGCTTTTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCACCAGAAGCCCTGAAGGCAAAGGTGGCTGAGGCAATGGACGTCCTGAGGAATGTTGCACAGCAGCAGCAGGCTGGTGGTGGTGCTGCTGATCAGCTCGCTTCATTATCACTTAATGACAACCTTGTTTCTTAA 1986 0.4703 MAQVQVQPQNAISGPNGGAAAAAAAAAAAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALYDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGSMDKAKFNNVFVKNLSESTTDDELKSVFGEFGPITSAVVMRDGDGKSKCFGFVNFENADDAARAVDALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSISDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLDMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMAPSVAPRVPMYPTGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRSGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVSGMPLRDAAISQQIPIGALASALANSAPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGGAADQLASLSLNDNLVS 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2791g00027 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Gabi2791g00027 661 SMART rrm2_1 40 113 IPR003954 GO:0003676
Gabi2791g00027 661 SMART rrm2_1 128 200 IPR003954 GO:0003676
Gabi2791g00027 661 SMART rrm2_1 322 394 IPR003954 GO:0003676
Gabi2791g00027 661 SMART rrm2_1 219 291 IPR003954 GO:0003676
Gabi2791g00027 661 CDD RRM4_I_PABPs 320 398 - -
Gabi2791g00027 661 SUPERFAMILY PABC (PABP) domain 502 651 IPR036053 GO:0003723
Gabi2791g00027 661 CDD RRM2_I_PABPs 125 201 IPR045305 -
Gabi2791g00027 661 Coils Coil 293 317 - -
Gabi2791g00027 661 FunFam Polyadenylate-binding protein 304 409 - -
Gabi2791g00027 661 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 561 638 IPR002004 GO:0003723
Gabi2791g00027 661 FunFam Polyadenylate-binding protein 25 124 - -
Gabi2791g00027 661 Gene3D - 204 302 IPR012677 -
Gabi2791g00027 661 SMART rrm1_1 219 291 IPR000504 GO:0003723
Gabi2791g00027 661 SMART rrm1_1 128 200 IPR000504 GO:0003723
Gabi2791g00027 661 SMART rrm1_1 40 113 IPR000504 GO:0003723
Gabi2791g00027 661 SMART rrm1_1 322 394 IPR000504 GO:0003723
Gabi2791g00027 661 FunFam Polyadenylate-binding protein 209 303 - -
Gabi2791g00027 661 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 40 634 IPR006515 GO:0003723
Gabi2791g00027 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 391 IPR000504 GO:0003723
Gabi2791g00027 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Gabi2791g00027 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 288 IPR000504 GO:0003723
Gabi2791g00027 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Gabi2791g00027 661 SUPERFAMILY RNA-binding domain, RBD 317 412 IPR035979 GO:0003676
Gabi2791g00027 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 199 IPR000504 GO:0003723
Gabi2791g00027 661 SMART poly_2 573 636 IPR002004 GO:0003723
Gabi2791g00027 661 MobiDBLite consensus disorder prediction 483 503 - -
Gabi2791g00027 661 CDD RRM1_I_PABPs 40 119 IPR034364 -
Gabi2791g00027 661 CDD RRM3_I_PABPs 217 296 - -
Gabi2791g00027 661 Gene3D - 303 406 IPR012677 -
Gabi2791g00027 661 FunFam Polyadenylate-binding protein 557 639 - -
Gabi2791g00027 661 Pfam Poly-adenylate binding protein, unique domain 569 633 IPR002004 GO:0003723
Gabi2791g00027 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Gabi2791g00027 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723
Gabi2791g00027 661 SUPERFAMILY RNA-binding domain, RBD 39 208 IPR035979 GO:0003676
Gabi2791g00027 661 Gene3D - 31 127 IPR012677 -
Gabi2791g00027 661 SUPERFAMILY RNA-binding domain, RBD 215 307 IPR035979 GO:0003676
Gabi2791g00027 661 Gene3D - 557 640 - -
Gabi2791g00027 661 Gene3D - 128 200 IPR012677 -
Gabi2791g00027 661 PANTHER RNA BINDING PROTEIN 38 101 - -
Gabi2791g00027 661 FunFam Polyadenylate-binding protein 125 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2791g00027 Gabi-Chr2791 273959 279288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2791g00027 38 660 Eukaryotic Initiation Factors Gene Family AT1G49760 75.868 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2791g00027 K13126 - gmx:100813735 1172.15