Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2791g00012 ATGAGAAAACCTTGTTGTGACAAAGAAAACACCAACAAAGGTGCTTGGTCCAAGCAAGAAGACCAAAAGCTCATCGATTACATTCGAGCTCATGGAGAAGGCTGTTGGCGTTCCATTCCCAAGGCTGCCGGGCTGCATCGTTGTGGCAAAAGCTGTAGGCTAAGATGGTTAAACTACTTAAGACCAGACATCAAACGTGGAATCTTTGCCCAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGCAACCGGTGGTCACTCATAGCTGGAAGGTTGCCAGGACGTACGGACAACGAGGTGAAGAACTATTGGAATTCTCACATACGAAGAAAGCTAATAAAGATGGGAATTGATCCAAATAACCATAAGCTACACCATGGATTTCCTCGCCCTCATTCTCATCACCCTCTTTCTGCTACGGGTGCATCATCATCTGAGTCCATGAACAAAGAACATAAAGTAGTCCCTTTATCCAAATCATGTGTAGAAGAAGAAACAGCAATTATTTCATCATCCCCCGTGAATCTTGACCTATCCATTGCTTTACCTTCGCCTAGGCTTGCTGTTGTGGAAGATAAACCTACGCCAAATTCTGAATTTGCTAAGAGATGTGACATGGATATAGATCTTAATTGTTAA 648 0.4352 MRKPCCDKENTNKGAWSKQEDQKLIDYIRAHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHHGFPRPHSHHPLSATGASSSESMNKEHKVVPLSKSCVEEETAIISSSPVNLDLSIALPSPRLAVVEDKPTPNSEFAKRCDMDIDLNC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2791g00012 215 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 156 - -
Gabi2791g00012 215 Gene3D - 68 130 - -
Gabi2791g00012 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Gabi2791g00012 215 SMART sant 65 113 IPR001005 -
Gabi2791g00012 215 SMART sant 12 62 IPR001005 -
Gabi2791g00012 215 MobiDBLite consensus disorder prediction 130 152 - -
Gabi2791g00012 215 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Gabi2791g00012 215 CDD SANT 71 111 IPR001005 -
Gabi2791g00012 215 CDD SANT 15 60 IPR001005 -
Gabi2791g00012 215 Gene3D - 13 65 - -
Gabi2791g00012 215 FunFam MYB-related transcription factor 12 65 - -
Gabi2791g00012 215 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gabi2791g00012 215 FunFam Transcription repressor MYB4 68 134 - -
Gabi2791g00012 215 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gabi2791g00012 215 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gabi2791g00012 215 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gabi2791g00012 215 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2791g00012 Gabi-Chr2791 148983 150401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2791g00012 2 186 MYB Transcription Factor Family AT4G38620 54.146 8.35e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2791g00012 Myb_DNA-binding 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2791g00012 K09422 - gmx:100306391 330.102