Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2791g00009 ATGGCTTCCAAAGCTCAAGGCATCGAACTAGGAGAATTGTCAAGTATGGAAGAGGGCGTTAAACATAGCCCTTCCAGAAACTGTTGCATGCATGGTTGTTGTTCATCAAACTATGTTGTAACCCTGGCACAGAAGGTGATCGCAGAAGTCATAGGCACATATTTCATGGTGTTTGCTGGTTGTGGTGCTCTAGCAGTGAATAAGATATATGGCTCAGTCACGTTTCCAGGCGTTGCTGTCACATGGGGGCTGATTGTAATGGTCATGTTTTACTCTGTTGGTCATGTCTCTGGTGGTCACTTCAATCCTGCAGTCACCATCACTTGGGCCATCTTTCGCCGCTTCTCATTCAAAGAGGTGCCACTGTACATTTTGGCTCAGATGCTGGGGTCCATACTCGCTAGTGCCACATTAGCCTTAATGTTTGATATCACACCAAAAGCTTACCTTGGAACGCTACCAGTTGGATCATATGGCCAGTCTTTAGTTGCTGAAATCATCATCACCTTTCTCTTGATGTTTGTCATATCTGCGGTTTCTACAGATGACAGAGCGGTGGGTGACTTGACAGGAGTTGCAGTTGGAATGACTATTATGTTGAATGTCTTAGTTGCTGGGCCTGTATCAGGAGCTTCCATGAACCCAGCAAGAAGTATTGGTCCCGCGCTTGTCATGCACTTTTACAAAGGGTTATGGGTATACGTAGTTGGTCCAATTATTGGAGCCATAGGAGGAGCTTTGGTCTATAACTTTCTTAGATCCACACAGAGTTAA 774 0.4522 MASKAQGIELGELSSMEEGVKHSPSRNCCMHGCCSSNYVVTLAQKVIAEVIGTYFMVFAGCGALAVNKIYGSVTFPGVAVTWGLIVMVMFYSVGHVSGGHFNPAVTITWAIFRRFSFKEVPLYILAQMLGSILASATLALMFDITPKAYLGTLPVGSYGQSLVAEIIITFLLMFVISAVSTDDRAVGDLTGVAVGMTIMLNVLVAGPVSGASMNPARSIGPALVMHFYKGLWVYVVGPIIGAIGGALVYNFLRSTQS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2791g00009 257 Gene3D Glycerol uptake facilitator protein. 12 257 IPR023271 -
Gabi2791g00009 257 PRINTS Major intrinsic protein family signature 195 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 PRINTS Major intrinsic protein family signature 232 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 PANTHER AQUAPORIN NIP2-1 26 256 IPR034294 -
Gabi2791g00009 257 Pfam Major intrinsic protein 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 NCBIfam MIP family channel protein 48 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 CDD MIP 44 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2791g00009 257 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Gabi2791g00009 257 SUPERFAMILY Aquaporin-like 40 253 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2791g00009 Gabi-Chr2791 100924 103088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2791g00009 1 257 Major Intrinsic Protein MIP AT5G37820 61.628 1.07e-112 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2791g00009 K09874 - gmx:100803763 388.652