Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2791g00008 ATGGAAAGTTCTCCTCCTCCTCCGTCGTCGGAGGGGCATGGCACTGATGCAGAGGCAGCGCCGCCGGTGGCCGTAGGGAGAGCCCTGGAGCTGCTCCAGATGAACGACCCTGATTTGAGGGTCCAAGCCGCTCGGGACATCCGCCGCCTCACCAAAACCTCCCGCCGTTGCCGCCGCCACCTCCGTCAAGCTATCGCTCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTCACATGAACCCGCCCTTCTCGCCTTGCTTAACCTTGCCGTCCAAGACGAAAAGAATAAAATTAACATTGTTGAAGCCGGTGCATTAGAACCGATAGTTAGTTTCCTCAATTCTCAAAATCCGAATCTACAAGAGTATGCAACTGCATCTTTGCTCACTTTATCTGCTGCTACAACCAACAGACCAATAATTAGTGCTTGTGGAGCCATTCCTCTTCTTGTGAAGATTCTTAGAGATGGAAGCCAACAAGCTAAAGCTGATGCGGTAATGGCTCTGTCCAATTTATCAACACACCTTGATAATCTCAGCATCATTCTCGAAACAAATCCAATCCCTTTTATAGTTAATGTTCTTAAAACCTGTAAAAAATCCTCAAAAGTAGCTGAAAAATGCTCTGCTTTGATGGAATCCTTGGTGGGTTATGACGAGGGAAGAACTGCATTGACATGTGAAGAAGGTGGGGTTCTTGCAGTTGTGGAAGTTCTTGAAAATGGGAATCTCCAAAGTAGGGAACATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGTGATAGATGTAAATATAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACGCCCAAGTCTCAGCCAAAGGCACATACCCTTTTGCAGTTACTAAGAGAGTCTCCTCATTCAAGACCTGAAATTGAACCTGACACTCTCGAGAACATAGTATGCAACATCATATCCCAGATTGATGGGGATGATCAACCTGATAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAACAGAGTTTGAAACATTTACAACAAAGAGCTCTTGTATGCACCCCAAGTGATCTGGCTATTACTAGTTGTGCTTCTCAACTTTCTTCAAAATGA 1140 0.4614 MESSPPPPSSEGHGTDAEAAPPVAVGRALELLQMNDPDLRVQAARDIRRLTKTSRRCRRHLRQAIAPLVSMLRVDSPESHEPALLALLNLAVQDEKNKINIVEAGALEPIVSFLNSQNPNLQEYATASLLTLSAATTNRPIISACGAIPLLVKILRDGSQQAKADAVMALSNLSTHLDNLSIILETNPIPFIVNVLKTCKKSSKVAEKCSALMESLVGYDEGRTALTCEEGGVLAVVEVLENGNLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKAHTLLQLLRESPHSRPEIEPDTLENIVCNIISQIDGDDQPDKAKKMLAEMVQVSMEQSLKHLQQRALVCTPSDLAITSCASQLSSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2791g00008 379 Gene3D - 15 366 IPR011989 -
Gabi2791g00008 379 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2791g00008 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 188 IPR000225 GO:0005515
Gabi2791g00008 379 SMART arm_5 135 175 IPR000225 GO:0005515
Gabi2791g00008 379 SMART arm_5 220 260 IPR000225 GO:0005515
Gabi2791g00008 379 SMART arm_5 94 134 IPR000225 GO:0005515
Gabi2791g00008 379 SMART arm_5 54 92 IPR000225 GO:0005515
Gabi2791g00008 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 105 147 IPR000225 GO:0005515
Gabi2791g00008 379 PANTHER U BOX DOMAIN-CONTAINING 16 305 - -
Gabi2791g00008 379 Pfam Armadillo/beta-catenin-like repeat 95 133 IPR000225 GO:0005515
Gabi2791g00008 379 FunFam U-box domain-containing protein 4 11 361 - -
Gabi2791g00008 379 SUPERFAMILY ARM repeat 26 329 IPR016024 -
Gabi2791g00008 379 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 63 105 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2791g00008 Gabi-Chr2791 96652 98841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2791g00008 25 306 U-box Gene Family AT2G23140 32.394 2.01e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2791g00008 - - ccaj:109805282 578.17