Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2791g00006 ATGGCATTGGCCAATGACAGAATTCCACGTGGCTCAAGCATGAGCAGCAAGTTTCAAACTTGTGTTTTCGATGAGACTGCTAGGGAGATTACTTCTCTGACGTTTCATGGGGTCAACGAGTACCAAAAATCTGTGGTTGAAGAGGAAGATTTCTCACAGAGCACTAACGGGCTAAGCAATGGTTCAGCTTCAGCCATAATCCATTCTCCTCCTCCATGTGGCAGTGCAAACGGGTATGTTTATGAGACCAGAAATTATGAACTTGAAGAAGCAGAAACTCTGATTAACTTCAAAGCCAATGAGTATAGCCACCTCATGCAACGTAGCGAATCTTTGCTTGACTTTCAGCAGAGCTGGCTGGTCTCCAACGAGAAAAATTTGCACGAAGGTCATAACCAATGGAATCATATTAGTCCTAGAAGCACCACAGACCTGTGCCTGGTGCAGGGTGGCTATAGCTCAATATTCAATAGTGCAAAAGAGAAGCAACGTGGTGAAAGTTCATGTGGGTGGTTATATTCTGAACCAACTGTCCCTGGTGATAGTATCCAAGATTTAGCAACACAAGAATCGATCTTGAGGAAGCGCTCTTCTAAGGAAAAGAACATGCAAGCTGGCAATGCCAAGAAGACATGCACAACTGCAAGTAAAGCAGAAAAACCTAAGTCAAACCCAACCAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATTCTACAAGAACTGGTACCCAACGGCTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCGATTAATTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGACGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATTGATGCCATTCTTTCTTCCCAAAGATGA 939 0.4366 MALANDRIPRGSSMSSKFQTCVFDETAREITSLTFHGVNEYQKSVVEEEDFSQSTNGLSNGSASAIIHSPPPCGSANGYVYETRNYELEEAETLINFKANEYSHLMQRSESLLDFQQSWLVSNEKNLHEGHNQWNHISPRSTTDLCLVQGGYSSIFNSAKEKQRGESSCGWLYSEPTVPGDSIQDLATQESILRKRSSKEKNMQAGNAKKTCTTASKAEKPKSNPTKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAINYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDAILSSQR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2791g00006 312 SMART finulus 231 280 IPR011598 GO:0046983
Gabi2791g00006 312 CDD bHLH_AtIND_like 227 288 - -
Gabi2791g00006 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 274 IPR011598 GO:0046983
Gabi2791g00006 312 Pfam Helix-loop-helix DNA-binding domain 235 275 IPR011598 GO:0046983
Gabi2791g00006 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 284 IPR036638 GO:0046983
Gabi2791g00006 312 Gene3D - 219 282 IPR036638 GO:0046983
Gabi2791g00006 312 Coils Coil 88 108 - -
Gabi2791g00006 312 FunFam Transcription factor bHLH83 223 282 - -
Gabi2791g00006 312 MobiDBLite consensus disorder prediction 204 231 - -
Gabi2791g00006 312 MobiDBLite consensus disorder prediction 195 237 - -
Gabi2791g00006 312 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 103 282 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2791g00006 Gabi-Chr2791 54144 55662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2791g00006 126 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 54.688 1.73e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2791g00006 HLH 8.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2791g00006 - - gmx:100803231 414.075