Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2791g00005 ATGATGGGTTTCTCCGAAGGAATCTGCACTGACAGAGGGAATCCTTCCAATGCTCCAGATACTTCTCCACACGTTTCCTCTTCTGCAGTTACAGAAGACTTATTTGACTACAAGAGGCTCAAATTCCGAAACTTTTTGAGAAAAATGATATGGGAGATTGCTTTTGCATGTGTTCCTGTTCCTTATCGTGACAAAAACGACGGCGACGGCTTCAAAAAGACAACTTTGGAGCACAACGAGGCGTGGTTGCTGGCAGAGTCTGGTGGGTGTGAAGCAGAATTGGCAAGTGCTGACCCGCAATCGGTTCACTCATCTTTCAGGTTCAGCTTCCGTTCTCAGGTTGAGGATGAATCCTTCAACATGTGTTCTTCTTCTTCTGCTGCTGCTGCAACCGTTTTGATGGTGAATTTGGAATATGTATCTCGAGCAAGGGAGATGAAATGGAGGAGAATGGAGTCATTGGAGAAAAGCATATCCCCAGTGGTCAACACTTTGACCAGGTTCAACTATAATGAAATTCTATCTGCCACACGCAATTTCTCCAAAGGAAGAGTATTGGGGAGAGGGGCCTTGAGCTGTGTTTTTAGGGGAAGAGTTGGACTTTTGAGGACTGCTGTTGCAATTAAACGGTTGGACAAGGAAGACAAGGAGTGTACCAAGACTTTTTGTAGAGAATTGATGATTGCCAGTTCTCTTCATAACGCAAACATTGTTCCCCTTGTGGGTTTTTGTATTGACTCAGAGGAGGGTTTGTTTTTGGTGTATAAATATGTATCAGGGGGCAGCTTAGAGCATCACTTGCATGAGAAGAAGAAGAGTGGGAAGCGTAGTTCACCACTTTCATGGTCTTTGAGGTATAAAATAGCAATTGGGATTGCAGAAGCCGTGGCTTATCTGCACAATGGAACAGAAAGATGTGTTGTTCACAGAGATATTAAGCCTTCAAACATTTTGCTTTCCTCTAGGAAGAATCCCAAGATATGTGATTTTGGATTAGCTACATGGACTTCCGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGTTATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTATCAGATAAGACTGATGTTTATGCTTTTGGAATTGTTTTATTGGAACTCATAACTGGCCGGAAGCCAATTGAAGCTAGAAGATCTTCGGGAGAGGAGAACTTGATCTTATGGGCTAAACCTTTGCTAAAGAAAGGGAATGGAGCCATTGAAGAGTTGCTTGATCCTCAACTCAAGTACAGTTCCAGATTCTCAAATCAAATGGCTCGGATGGTTGAAGCAGCAGCTGCCTGTGTTACAAGTGAAGAATATAGGAGACCAGGCATACATGAGATTCTTGCGATACTGAAAGGTGAAGAAAAGCCTGTTTTCTCTAGAACAAGGAAGTCTGGTCATTTTGGGAATGGATGCGTGTTTGATTGTAACCCTCAATTCCAACAAACAAATAATGAGATGAAAAGTCACTTGGCTTTGGCAATGGTAGGAGTTCCAGGGTATGAGGATGATGATCATCTTTATGATCGTTAA 1560 0.4263 MMGFSEGICTDRGNPSNAPDTSPHVSSSAVTEDLFDYKRLKFRNFLRKMIWEIAFACVPVPYRDKNDGDGFKKTTLEHNEAWLLAESGGCEAELASADPQSVHSSFRFSFRSQVEDESFNMCSSSSAAAATVLMVNLEYVSRAREMKWRRMESLEKSISPVVNTLTRFNYNEILSATRNFSKGRVLGRGALSCVFRGRVGLLRTAVAIKRLDKEDKECTKTFCRELMIASSLHNANIVPLVGFCIDSEEGLFLVYKYVSGGSLEHHLHEKKKSGKRSSPLSWSLRYKIAIGIAEAVAYLHNGTERCVVHRDIKPSNILLSSRKNPKICDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGIVLLELITGRKPIEARRSSGEENLILWAKPLLKKGNGAIEELLDPQLKYSSRFSNQMARMVEAAAACVTSEEYRRPGIHEILAILKGEEKPVFSRTRKSGHFGNGCVFDCNPQFQQTNNEMKSHLALAMVGVPGYEDDDHLYDR 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2791g00005 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Gabi2791g00005 519 ProSiteProfiles Protein kinase domain profile. 180 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2791g00005 519 Gene3D Transferase(Phosphotransferase) domain 1 258 474 - -
Gabi2791g00005 519 FunFam probable serine/threonine-protein kinase PBL7 141 257 - -
Gabi2791g00005 519 PANTHER OS08G0249100 PROTEIN 110 470 IPR046958 -
Gabi2791g00005 519 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2791g00005 519 FunFam Putative receptor-like serine/threonine-protein kinase 258 476 - -
Gabi2791g00005 519 Pfam Protein kinase domain 181 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2791g00005 519 MobiDBLite consensus disorder prediction 10 26 - -
Gabi2791g00005 519 SMART serkin_6 180 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2791g00005 519 Gene3D Phosphorylase Kinase; domain 1 164 257 - -
Gabi2791g00005 519 SUPERFAMILY Protein kinase-like (PK-like) 159 462 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2791g00005 Gabi-Chr2791 33805 36400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2791g00005 166 463 Trihelix Transcription Factor Family AT1G70460 42.333 1.26e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi2791g00005 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2791g00005 - - gmx:100808074 768.844