Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2786g00002 ATGGATTCTTCCAAAGGCACAATGGAGGTTGTAGTCCCAAGACAAGACCAGTCAAATCAACATAATGAGGATAAGCTAGTTCCAAGACAAGACCAGTCAAATCAACATAATGAGGATAAGCTGGAGTTCTCAAGATGCTCAAAAAAATTTGGAACTTCAAAGAGAAAGGCTGAAGAAATTCATGAGCATGGTAATAAGAAACCAAAACCTGAAGGGGAAAAAGTAAATATGGGAAGTTTAAAGAACAGTACCTCAGTAAGAATGGAGGTTGTAGTTCCAAGACAAGACCAGTCAAATCAACATAATGAGGATAAGCTGGAGTTCTCAAGATGCTCAAAAACATATGGAACTTCAAAGAGAAAGGCTGAAGAAATTCATGAGCATGGTAATAAGAAACCAAAACCTGAAGGGGAACAAGTAAATATGGGACGATTAAAGAACAGTACCGCTGTAAGAATGGAGGTTACAGCTGCAAGACGAGAACAGTCAAATCAACCTAACAATAATAAGCCGGACAAACTCTCTAAATGCTCTAGGCCTCTTAGAATGTCAAAGAAGGGAAAGGTTCAGGAGATTCATAAACTTGATATCACGAAACCAAAGTCAGAACCGAAAGAAGACAATCTGGTAAGTTCAAAAAGGACCACTAAATTTTCATCCAATAAAGGAGATGAGCCAAAGAAGCTTACTGTCTCAAACAAGAAAAGGAAATTTGAAGATGATTTCTTAATTAACAAATTGGAAGAAGATGAAGAAATGTTTTTTCCTTTAAAGACAAAGACCAGGAGCAGAGCTAAAAGAATGGATGACATGATGGATGTCGAGCAAAATCCCCGGAAATGTCATCAGTGCATGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCTGAAAATGTACTGTATGCGATGCATCAATCTATGGTACTCTAATATGTCAATAGAAGAAATTGCTGAAAGCTGCCCATGTTGCCGTAAAAACTGCAATTGCAATGTTTGCTTGCGTTCAAGAGGAATGATTAAGACATCCAACAGGGACATCACTGATTATGAGAAAGCTCAATATATGCAATATATGATTAACTTACTCCTTCCATTTCTTGAACAAATTTGTCATGAACAATGTCAAGAGGAGGATATTGAAGCTAAAATACAAGGAAAATCTTCTTGTGAGATTGAGATACACCAAAGTCTTTGTGGTGACAATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTGTTGACCTTCACCGAAGGTGCCCCGAGTGTTCTTATGAACTCTGTCTCACTTGTTGCCAAGAAATACGCAAGGGAAGCATTACTTCCCGGGATGAGCTGAAGTTCCAATACTTGAATAGGGGTTATGACTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATGTAGAGACTTCAAAGGGACATATTGAGCTATCTACTAAGTGGAATGCCAAAAGTCATGGAAGTGTTAGTTGTGCTCCAAAGGAGGGAGGAGGTTGTGGTAGTTCTGAATTGGAGCTAAGGCGCATCCTTCAACGTGGGTGGATATCTGACTTGGAAGCAAAAGCTCGTGATGTGTTGAAGATTTGGGAAATTGAACAAATGAGAAGGGTGGCACTTGGAGAAGGCACAAACGACAATAACATATACTGTCCAGAGTCAAGAGACATTTTAAAAGAAGAATTATTACTCTTTCAAAGGCATTGGACTAATGGTGAACCAATTATAGTTAAGAATATTCTTAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTCATGCGGCGAGTATTATGTGAAAATAGAGTTTCAGAAATCAGCTCAAGAATGTCAGAAGTTAAGGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATTAATACTCATAAGTTTTTTAAAGGTTATACTGAGGGAAGAACATATCAAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAAATCTTTTGCCTCGCCATTGTGATGAGTTTATTCGTTCCTTGCCATTTCAAGAGTACACTGATCCTGGGGCTGGAATTGTCAATCTTGCTGTAAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCAAAAACATACATTGCTTATGGGATTAAAGAAGAACTTGGTAGAGGAGACTCTGTAACAAAACTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACGGCCGAGGTGATATTAAGTGATGAGCAGCTCTCTATTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAAAGAACATTGTGCACAGGAGAGGATTGCTGAATGCCTGAATGGTGGACCTTGCAATAACAACAAAGAACATATAAAAGATAAGGAAGTCTTAGAACCTAAAGATATGGAGAAGCGCCCTTTTGAAATTAATGGGAAGATATTTCAAAATGATGTGTCTGAGGGGGTCATTTTTGCTGCTATTTCTCCAGAAAATGAACCAACGGAAACAGGTGGTGCCCTATGGGATATCTTTAGGAGAGATGATATTGAAAAGTTAGAAACATATTTAAGAAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCGGTTGAACAGGTTGTTCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTGAAGGAGGAGTTTGGTGTAGAACCCTGGACTTTTGAGCAGAAACTTGGGGAGGCTGTATTTATTCCTGCTGGATGCCCACATCAAGTGAGGAACCTCAAGTCATGCATAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTTCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTATATGCCGTTGATCAAGCTGTCAAAGACCTTCAAGCTTTTCTGGTGGCTGATACTATCAGTTGCTGTGAATAG 2997 0.3941 MDSSKGTMEVVVPRQDQSNQHNEDKLVPRQDQSNQHNEDKLEFSRCSKKFGTSKRKAEEIHEHGNKKPKPEGEKVNMGSLKNSTSVRMEVVVPRQDQSNQHNEDKLEFSRCSKTYGTSKRKAEEIHEHGNKKPKPEGEQVNMGRLKNSTAVRMEVTAARREQSNQPNNNKPDKLSKCSRPLRMSKKGKVQEIHKLDITKPKSEPKEDNLVSSKRTTKFSSNKGDEPKKLTVSNKKRKFEDDFLINKLEEDEEMFFPLKTKTRSRAKRMDDMMDVEQNPRKCHQCMKKERTAFVPCTKCLKMYCMRCINLWYSNMSIEEIAESCPCCRKNCNCNVCLRSRGMIKTSNRDITDYEKAQYMQYMINLLLPFLEQICHEQCQEEDIEAKIQGKSSCEIEIHQSLCGDNERVYCDHCATSIVDLHRRCPECSYELCLTCCQEIRKGSITSRDELKFQYLNRGYDYMHGGDPLPVSCDVETSKGHIELSTKWNAKSHGSVSCAPKEGGGCGSSELELRRILQRGWISDLEAKARDVLKIWEIEQMRRVALGEGTNDNNIYCPESRDILKEELLLFQRHWTNGEPIIVKNILKQGTGLSWEPMVMRRVLCENRVSEISSRMSEVKAIDCLANCEVEINTHKFFKGYTEGRTYQNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRSLPFQEYTDPGAGIVNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILSDEQLSIISKLKEAHKAQDEKEHCAQERIAECLNGGPCNNNKEHIKDKEVLEPKDMEKRPFEINGKIFQNDVSEGVIFAAISPENEPTETGGALWDIFRRDDIEKLETYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCIKVAVDFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLQAFLVADTISCCE 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2786g00002 998 ProSiteProfiles Zinc finger RING-type profile. 281 327 IPR001841 -
Gabi2786g00002 998 MobiDBLite consensus disorder prediction 18 74 - -
Gabi2786g00002 998 MobiDBLite consensus disorder prediction 1 17 - -
Gabi2786g00002 998 SUPERFAMILY Clavaminate synthase-like 566 985 - -
Gabi2786g00002 998 MobiDBLite consensus disorder prediction 158 174 - -
Gabi2786g00002 998 Pfam JmjC domain, hydroxylase 835 938 IPR003347 -
Gabi2786g00002 998 SMART cupin_9 668 955 IPR003347 -
Gabi2786g00002 998 ProSiteProfiles JmjC domain profile. 687 955 IPR003347 -
Gabi2786g00002 998 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 277 346 IPR018866 -
Gabi2786g00002 998 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 33 987 IPR045109 GO:0032454|GO:0033169
Gabi2786g00002 998 MobiDBLite consensus disorder prediction 98 139 - -
Gabi2786g00002 998 Gene3D Cupin 551 964 - -
Gabi2786g00002 998 MobiDBLite consensus disorder prediction 1 228 - -
Gabi2786g00002 998 MobiDBLite consensus disorder prediction 77 97 - -
Gabi2786g00002 998 MobiDBLite consensus disorder prediction 175 228 - -
Gabi2786g00002 998 CDD cupin_RmlC-like 879 939 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2786g00002 Gabi-Chr2786 21363 28764 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2786g00002 JmjC 3.8e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2786g00002 K15601 - gmx:100797860 1338.17