Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2786g00001 GTAGAAATTAATACTCATAAGTTTTTTAAAGGTTATACTGAGGGAAGAACATATCAAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAAATCTTCTGCCTCGCCATTGTGATGAGTTTATTCGTTCCTTGCCATTTCAAGAGTACACTGATCCTGGGGCTGGAATTGTCAATCTTGCTGTAAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCAAAAACATACATTGCTTATGGGATTAAAGAAGAACTTGGTAGAGGAGACTCTGTAACAAAACTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACGGCCGAGGTGATATTAAGTGATGAGCAGCTCTCTATTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAAAGAACATTGTGCACAAGAGAGGATTGCTGAATGCCTGAATGGTGGACCTTGCAATAACAACAAAGAACATATAAAAGATAAGGAAGTCTTAGAACCTAAAGATATGGAGAAGCGCCCTTTTGAAATTAATGGGAAGATATTTCAAAATGATGTGTCTGAGGGGGTCATTTTTGCTGCTATTTCTCCAGAAAATGAACCAACGGAAACAGGTGGTGCCCTATGGGATATCTTTAGGAGAGATGATATTGAAAAGTTAGAAACATATTTAAGAAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCGGTTGAACAGGTTGTTCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTGAAGGAGGAGTTTGGTGTAGAACCCTGGACTTTTGAGCAGAAACTTGGGGAGGCTGTATTTATTCCTGCTGGATGCCCACATCAAGTGAGGAACCTCAAGTCATGCATAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTTCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTATATGCCGTTGATCAAGCTGTCAAAGACCTTCAAGCTTTTCTGGTGGCTGATACTATCAGTTGCTGTGAATAG 1116 0.3987 VEINTHKFFKGYTEGRTYQNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRSLPFQEYTDPGAGIVNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILSDEQLSIISKLKEAHKAQDEKEHCAQERIAECLNGGPCNNNKEHIKDKEVLEPKDMEKRPFEINGKIFQNDVSEGVIFAAISPENEPTETGGALWDIFRRDDIEKLETYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCIKVAVDFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLQAFLVADTISCCE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2786g00001 371 SMART cupin_9 41 328 IPR003347 -
Gabi2786g00001 371 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 360 IPR045109 GO:0032454|GO:0033169
Gabi2786g00001 371 FunFam Transcription factor jumonji (JmjC) domain-containing protein 152 337 - -
Gabi2786g00001 371 ProSiteProfiles JmjC domain profile. 60 328 IPR003347 -
Gabi2786g00001 371 Gene3D Cupin 1 337 - -
Gabi2786g00001 371 Pfam JmjC domain, hydroxylase 208 311 IPR003347 -
Gabi2786g00001 371 SUPERFAMILY Clavaminate synthase-like 13 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2786g00001 Gabi-Chr2786 167 2093 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2786g00001 JmjC 8e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2786g00001 K15601 - gmx:100797860 632.484