Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2783g00001 ATGGCTGATTCCAAGGAGAAAAATCGTAAATTTGTTCAAACCATTGAACTCCAGATTGGGCTGAAAAACTATGATCCACAGAAGGATAAGCGTTTTAGTGGCTCTGTCAAGTTGCCCCACATCCCTGTCCCCAAAATGAAAATTTGCATGCTCGGTGATGCTCAACACGTTGAGGAGGCAGAGAAGATAGGATTGGACTACATGGATGTTGAAGCTTTGAAAAAGCTCAACAAAAATAAGAAGCTGGTAAAAAAACTGGCTAAAAAATACCATGCCTTTTTAGCTTCTGAGGCAGTCATAAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGGAAGTTTCCTACACTTGTCACTCACCAAGAATCTCTTGAGTCAAAGGTTAATGAGACTAAGGCCATGGTAAAATTTCAGCTAAAGAAGGTGCTCTGCATGGGAGTAGCAGTGGGCAATGTTAGTATGGAAGAAAAGCAAATCTTCCAAAATGTGCAACTGAGCGTTAACTTCCTTGTCAGTTTGTTGAAAAAGAACTGGCAAAATGTTAGATGCTTGTATCTGAAGAACACCATGGGGAAATCTTACCGTGTATTTTGA 603 0.4129 MADSKEKNRKFVQTIELQIGLKNYDPQKDKRFSGSVKLPHIPVPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKNTMGKSYRVF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2783g00001 200 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 5 193 - -
Gabi2783g00001 200 ProSitePatterns Ribosomal protein L1 signature. 100 119 IPR023673 -
Gabi2783g00001 200 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 2 200 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Gabi2783g00001 200 FunFam Ribosomal protein 121 198 - -
Gabi2783g00001 200 FunFam Ribosomal protein L10a 1 103 - -
Gabi2783g00001 200 Gene3D - 5 195 - -
Gabi2783g00001 200 FunFam Ribosomal protein 49 138 - -
Gabi2783g00001 200 Pfam Ribosomal protein L1p/L10e family 6 194 IPR028364 -
Gabi2783g00001 200 SUPERFAMILY Ribosomal protein L1 6 200 IPR023674 -
Gabi2783g00001 200 Gene3D - 49 138 IPR016095 -
Gabi2783g00001 200 CDD Ribosomal_L1 5 199 IPR028364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2783g00001 Gabi-Chr2783 18468 22889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2783g00001 4 200 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.848 8.19e-118 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2783g00001 K02865 - gmx:100527698 370.548