Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2779g00016 ATGGGGATGGCTACAGAGTCACAGTTCCATGTATTGGCAGTTGATGACAGCATGATAGATAGAAAACTGATTGAGAGACTCCTCAAAACCTCTTCATACCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTAGGCTTGCATGAGAATGACCAAAGCAACCCAAATACACCATCTTTTTCTCTTAACAATCATCAGGAAGTGGAGGTGAACCTTGTTATAACAGACTACTGTATGCCTGGCATGACAGGCTATGATTTACTCAAGAAAATCAAGGAATCTTCATCTTTTAAAAACATACCGGTGGTGATTATGTCATCTGAAAATGTGCCTTCCAGGATTAGCAGATGCCTGAATGAAGGAGCAGAGGAGTTTTTCTTGAAGCCAGTGAGGTTGTCAGATATGGATAGGCTTAAACCCCATATAATGAAGACAAAGTTGAAAGATCAAAAGCAAGAAAACCAAGAAAAGCTTGAAAACTCAGAAGCTCAACAACAGCAACATATCCAAAATGAACAGCAACAAGCACAGTTTCAGCCAACAGAAGACCGACAACAGCAGCAATCACTACAACAAGCCATCAATAACAAGAGGAAGACAATGGAACATGGGCTTTCCCCTGATATTGACAGAACAAAACCAAGATACAATGGCATAACCACTTTGGTTGATGAATCGTTGCCAAATAATTTTCTTGAGTTTCAAAATGTAATTCCCATATAA 732 0.3934 MGMATESQFHVLAVDDSMIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHENDQSNPNTPSFSLNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSFKNIPVVIMSSENVPSRISRCLNEGAEEFFLKPVRLSDMDRLKPHIMKTKLKDQKQENQEKLENSEAQQQQHIQNEQQQAQFQPTEDRQQQQSLQQAINNKRKTMEHGLSPDIDRTKPRYNGITTLVDESLPNNFLEFQNVIPI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2779g00016 243 SUPERFAMILY CheY-like 8 169 IPR011006 -
Gabi2779g00016 243 Coils Coil 147 178 - -
Gabi2779g00016 243 CDD REC_typeA_ARR 11 141 - -
Gabi2779g00016 243 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 191 IPR045279 GO:0009736
Gabi2779g00016 243 SMART REC_2 9 145 IPR001789 GO:0000160
Gabi2779g00016 243 Gene3D - 10 216 - -
Gabi2779g00016 243 MobiDBLite consensus disorder prediction 162 194 - -
Gabi2779g00016 243 Pfam Response regulator receiver domain 11 138 IPR001789 GO:0000160
Gabi2779g00016 243 MobiDBLite consensus disorder prediction 150 194 - -
Gabi2779g00016 243 ProSiteProfiles Response regulatory domain profile. 10 146 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2779g00016 Gabi-Chr2779 276032 278199 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2779g00016 1 226 Response Regulator Gene Family AT3G57040 63.866 4.35e-99 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2779g00016 Response_reg 1.3e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2779g00016 K14492 - cave:132191892 325.479