Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2779g00015 ATGGGGATGGCTACAGAGTCACAGTTCCATGTATTGGCAGTTGATGACAGCATGATAGATAGAAAACTGATTGAGAGACTCCTCAAAACCTCTTCATACCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTAGGCTTGCATGAGAATGACCAAAGCAACCCAAATACACCATCTTTTTCTCTTAACAATCATCAGGTGAACCTTGTTATAACAGACTACTGTATGCCTGGCATGACAGGCTATGATTTACTCAAGAAAATCAAGGAATCTTCATCTTTTAAAAACATACCGGTGGTGATTATGTCATCTGAAAATGTGCCTTCCAGGATTAGCAGATGCCTGAATGAAGGAGCAGAGGAGTTTTTCTTGAAGCCAGTGAGGTTGTCAGATATGGATAGGCTTAAACCCCATATAATGAAGACAAAGTTGAAAGATCAAAAGTCTGGGATTAGGCGCAGGAGAAAGGGTAATTATGATTGTGGAAAAGCCTCTATGGTTATTCCTTCTGATAATCTGCAGTCTGATGTTGGCCTCTCTTCCTGCTTGCCTTGTTATGGCAGTATAATTAGAGATAAAATCAGTGAAAGCGTAAATCCTGCTTCAGGGAAAGAAGTTAGTGTGCTCGACGATGAAGGTGCCCAAACAGGTCATGATTTGTGTGAAAAGTCCTGTCATAGTTATGAATTTGATGGATCAATGGTTGATAGTCCAGTACTGGAAAAATATTCATCAACACTGGAACACTACATGAGTAATGTGCAACACAATGTCCAGATTGTTCGAAATGAAGAGAAGCGAATCAAGATGTTGGAAAATGAACTCGAAGAAGAGAAAGCTGCCTATGCTGCTCTTTACCTAGTGCTAGAAAAGGAGAGAGCTGCAGCTGCTAGTCCAGGACAGGACAAAAAATCATCTTCATTGGAACACTACATGAGTAAAGAGCAAGACAATGTCCAGATTGTTCGAAATGAAGAGAACCGTATCAAGATGTTGGAAAACGCACTTGAAGAAGAGAAAGCTGCGTATGCTGCTCTTTACCTAGAGCTAGAAAAGGAGAGAGCTGCAGCTGCTAGTCCAGGACAGGACAAAAAATCATCTCCATTGGAACACTGCATGAGTAAAGAGCAAGACAATGTCCAGATTGTTCGAAATGAAGAGAACCGTATCAAGATGTTGGAAAACGCGCTTGAAGAAGAGAAAGCTGCCTATGCTGCTCTTTACCTAGAGCTAGAAAAGGAGACAGCTGCAGCTGTTAGTCCAGGACAGGACAAAAAATCATCTTCATTGGAACACTACATGAGTAATGAGCAAGACAATGTCCAGATTGTTCGAAATGAAGAGAACTGTATCAAGATGTTGGAAAACGCACTTGAAGAAGAGAAAGCTGCCTATGCTGCTCTTTACCTAGAGCTAGAAAAGGAGAGAGCTGCAGCTGCTACTGCAGCTGATGAAGCCATGGCTATGATATCACGTCTGCAGGAGGAGAAGGCATCAGTGGAAATGGAAATGAGACAATACCTGAGGATGATAGAAGAAAGAGTCTCTTATGATGAAGAAGAGATGAATATTCTGGAAGAGATCCTTATAAGAAGGGAAAGGGAGAATCACTTTCTGGAAAAGGAGCTTGAAGCTTATAGGCAGATGGATTTGAATGGAAGTGACCAGTCAAATGACAAGCCAAAGCTGCTGCTTGATGAATGGGGACAAAGACCTCCACTTTCAGTTGAAACACATGAAGATCCACTGCAGAGTGAAAGCACCATATCAATTGTTAAGAAAGATGAAGCATCAAATATTTCCTCAAATTATATGATTACTCAAACTTGTATCGATACAGAAGAGGAAGAAGAGCTGGAGAAAAACACAGAACACAAGGATCAAATGCACAGTGATATACATAGCTCTTTTTATGATACTGAACCTGATGTTCTTGATGTTCATGTTGTAGATGACAACATAAAACTTAGAGAAGAGGAAAATGAAAAGTTAAGCAGCTCTTTATTTAGTACTGTTTCAAATGAATCCAGAAACAGTTATCTTGAATTTGGAATTGTAGCAGTACCGAGCACTAATACAGTGAGTAATTGTCCAAGGACAAGCAAGACAGAAAATGAGAATAGTGATGATGGCCCAACTAGTCAATTATCCATGTTCTATAATTCAAGATGCAAAACTTTGCCTTTTGATTCTGAAAGCGATTCTTCATCAGCAGTTCATAATGAAAAGTTAAAGATTGACAATGAGATTGAAATTCTTGGAGAAAGGCTGAGAATGGTAAAACATGAAAAAGAAAAATTGACTTTATTTGCGGAGAATGTTGAAAGTGAAAAACGTCAGTTTAAGCTTCTGGAGGAGATAGCAAACCATCTTCAACAAATTAAACAGTTAAGAAACCCAGTGCGTGGGGCTTCCTTGCCCCCTTCATCATCTAAGGTGAGCTTGAGGAAAAGACGCTGCCAAAGTGCATCTTGGGAGACATGTGAAAGCAGCTAA 2505 0.4 MGMATESQFHVLAVDDSMIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHENDQSNPNTPSFSLNNHQVNLVITDYCMPGMTGYDLLKKIKESSSFKNIPVVIMSSENVPSRISRCLNEGAEEFFLKPVRLSDMDRLKPHIMKTKLKDQKSGIRRRRKGNYDCGKASMVIPSDNLQSDVGLSSCLPCYGSIIRDKISESVNPASGKEVSVLDDEGAQTGHDLCEKSCHSYEFDGSMVDSPVLEKYSSTLEHYMSNVQHNVQIVRNEEKRIKMLENELEEEKAAYAALYLVLEKERAAAASPGQDKKSSSLEHYMSKEQDNVQIVRNEENRIKMLENALEEEKAAYAALYLELEKERAAAASPGQDKKSSPLEHCMSKEQDNVQIVRNEENRIKMLENALEEEKAAYAALYLELEKETAAAVSPGQDKKSSSLEHYMSNEQDNVQIVRNEENCIKMLENALEEEKAAYAALYLELEKERAAAATAADEAMAMISRLQEEKASVEMEMRQYLRMIEERVSYDEEEMNILEEILIRRERENHFLEKELEAYRQMDLNGSDQSNDKPKLLLDEWGQRPPLSVETHEDPLQSESTISIVKKDEASNISSNYMITQTCIDTEEEEELEKNTEHKDQMHSDIHSSFYDTEPDVLDVHVVDDNIKLREEENEKLSSSLFSTVSNESRNSYLEFGIVAVPSTNTVSNCPRTSKTENENSDDGPTSQLSMFYNSRCKTLPFDSESDSSSAVHNEKLKIDNEIEILGERLRMVKHEKEKLTLFAENVESEKRQFKLLEEIANHLQQIKQLRNPVRGASLPPSSSKVSLRKRRCQSASWETCESS 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2779g00015 834 Coils Coil 264 295 - -
Gabi2779g00015 834 Coils Coil 325 359 - -
Gabi2779g00015 834 MobiDBLite consensus disorder prediction 695 720 - -
Gabi2779g00015 834 Coils Coil 486 513 - -
Gabi2779g00015 834 PANTHER BNAANNG28530D PROTEIN 326 362 - -
Gabi2779g00015 834 CDD REC_typeA_ARR 11 138 - -
Gabi2779g00015 834 SMART REC_2 9 142 IPR001789 GO:0000160
Gabi2779g00015 834 MobiDBLite consensus disorder prediction 360 381 - -
Gabi2779g00015 834 ProSiteProfiles Response regulatory domain profile. 10 143 IPR001789 GO:0000160
Gabi2779g00015 834 MobiDBLite consensus disorder prediction 802 821 - -
Gabi2779g00015 834 Pfam Response regulator receiver domain 11 135 IPR001789 GO:0000160
Gabi2779g00015 834 Coils Coil 525 552 - -
Gabi2779g00015 834 Pfam Zein-binding 456 546 IPR007656 -
Gabi2779g00015 834 Coils Coil 447 481 - -
Gabi2779g00015 834 Gene3D - 10 165 - -
Gabi2779g00015 834 Coils Coil 386 417 - -
Gabi2779g00015 834 ProSiteProfiles GTD-binding domain profile. 452 550 IPR007656 -
Gabi2779g00015 834 SUPERFAMILY CheY-like 8 136 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2779g00015 Gabi-Chr2779 276009 287779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2779g00015 1 151 Response Regulator Gene Family AT3G57040 78.065 1.60e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2779g00015 Response_reg 2.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2779g00015 K14492 - gmx:100809228 516.924