Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2779g00012 ATGGTGTCAGGTTCAGGGATCTGTGCGAAGAGAGTGGTGGTGGATGCACGGCACCATATGCTTGGTCGTCTAGCGTCGATCGTGGCGAAGGAGCTTCTCAACGGGCAGAAGGTGGTGGTTGTGCGGTGCGAGGAAATTTGCATCTCCGGTGGACTCGTTAGGCAGAAGATGAAGTACATGAGGTTCCTTCGCAAGCGCATGAACACCAAGCCTTCCCATGGTCCCATCCATTTTCGTGCTCCTGCTAAGATCTTCTGGCGCACTCTTCGTGGGATGATACCACATAAGACAAAGCGAGGGGAAGCTGCTCTTGGTCGTTTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAAAGGATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGCTTCAGAAAGGACACAAGCACTGCTTGCTGGGTAGATTGTCATCAGAGGTTGGATGGAACTACTATGATACCATTAGGCAATTGTTTTGTTTCTCACAGGAGCTTGAAAAGAAGAGAAAGGACAGAGCACAGTTGGTTTACGAGGGAAAGAAGCAGCTCAACAAATTAAGGGTGAAAGCTGAAAAGGTTGCTGATGAGAAGCTTGGTTCCCAACTTGATGTTCTTGCTCCAGTTAAGTACTGA 642 0.4875 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTLRGMIPHKTKRGEAALGRLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKHCLLGRLSSEVGWNYYDTIRQLFCFSQELEKKRKDRAQLVYEGKKQLNKLRVKAEKVADEKLGSQLDVLAPVKY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2779g00012 213 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Gabi2779g00012 213 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gabi2779g00012 213 FunFam 60S ribosomal protein L13a 166 213 - -
Gabi2779g00012 213 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2779g00012 213 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2779g00012 213 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gabi2779g00012 213 PANTHER RIBOSOMAL PROTEIN L13 1 195 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2779g00012 213 Gene3D - 165 213 - -
Gabi2779g00012 213 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi2779g00012 213 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Gabi2779g00012 213 FunFam 60S ribosomal protein L13a-4 8 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2779g00012 Gabi-Chr2779 185390 187412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2779g00012 1 213 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 85.446 1.56e-135 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2779g00012 K02872 - gmx:100813340 388.267