Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2779g00005 ATGCTAGCATTATCCCCTCCTCCTATGTTCTCACCCATTGAATGGCCCTTTGAGGAGCCCAAAAGCAATAGCCAGAACTACTTATACAAAGACACTGAGGCCTATGAACAATTTTACCATCAGTTGTTTTCATCTCAGACACTTGTTGGAGTCAAAAGATCTACTGATCATTCATCACCCATATGCAGCGACCCAACTATGGTCAAGAAGCTTGATCACAATGCTAGTGAACGTGATCGCCGCAAGAAGATCAATGCCTTATATTCTTCACTTCGTTCACTTATTCCAGTGGCAGATCAAATGAGGAAGTTGAGCATTCCAGCAACAATTTCACGCGTCCTAAATTACATACCAGATTTACAGCAGCAAGTGGAAGGACTAGCAAGGAAAAAGGAAGAGATTTCATTGAAAATTTCTCAGCAAGGAAATGCTGTGATCAGTGAAGAATCTAAAAGGAAGATAGCCCATTACAACTCTGATTTTGTAGTTTCAGTAAGTAGGCTCAATGATAGTGAGGCTTCTATTGAGATTTCGTCTTATAAGGTCCACAAGATTCCACTATCTGAGATGTTGCTGTGTTTAGAAAATGATGGCCTTGTAATGCTAAATGCTTCTTCGTCTGAGACCTTTGGAGGGAGGATCTTCTATAACTTGCATTTCCAGGTGGATAACACTCACGGATTAGAATCCGAGATTCTGAGTGAGAAGCTTTTGTCAATATTTGAGAAGAAGGAAGGGAATTTTCCAGTTAAATGA 756 0.4034 MLALSPPPMFSPIEWPFEEPKSNSQNYLYKDTEAYEQFYHQLFSSQTLVGVKRSTDHSSPICSDPTMVKKLDHNASERDRRKKINALYSSLRSLIPVADQMRKLSIPATISRVLNYIPDLQQQVEGLARKKEEISLKISQQGNAVISEESKRKIAHYNSDFVVSVSRLNDSEASIEISSYKVHKIPLSEMLLCLENDGLVMLNASSSETFGGRIFYNLHFQVDNTHGLESEILSEKLLSIFEKKEGNFPVK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2779g00005 251 Coils Coil 117 137 - -
Gabi2779g00005 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Gabi2779g00005 251 SMART finulus 74 126 IPR011598 GO:0046983
Gabi2779g00005 251 FunFam Transcription factor ORG2 64 149 - -
Gabi2779g00005 251 Pfam Helix-loop-helix DNA-binding domain 70 121 IPR011598 GO:0046983
Gabi2779g00005 251 CDD bHLH_AtORG2_like 69 141 - -
Gabi2779g00005 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 138 IPR036638 GO:0046983
Gabi2779g00005 251 Gene3D - 63 152 IPR036638 GO:0046983
Gabi2779g00005 251 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 58 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2779g00005 Gabi-Chr2779 67189 69712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2779g00005 1 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.379 3.39e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2779g00005 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2779g00005 - - vvi:100262373 273.092