Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2773g00002 ATGATGAAAGGCTTGGTGGTTGATGAAAATATGTCCAATTTGACATCTGCATCAAGTGAAATAAGTGCTTCTTCCGGAACAAGGAATGACAATGGTTCTCTACATCCTCAGTACTCATCTACTTCAACAAATCAAGAACCACAGCCCAAAAAGAAGAGAAGCCTTCCAGGATACCCAGACCCTGAGGCTGAAGTGATAGCCTTGACTCCCAAGACCCTCATGACAACAAACCGGTTCATTTGTGAGGTTTGTAACAAAGGGTTTCAAAGAGATCAGAATCTACAGCTTCATAAAAGAGGGCATAATTTGCCATGGAAGCTAAAGAAGAAAAATAGCAAAGAAATAACAAGAAAGAAAGTATATATATGCCCAGAGCCAACATGCGTTCACCATGACCCATCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAACACTTTTTCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGCGTTACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAAATTTGTGGCACCAGAGAGTATAAATGTGACTGTGGAACCCTTTTCTCTAGGAGGGATAGTTTTATAACTCACAGAGCCTTCTGTGATGCTTTAGCACAGGAAAGTGCTAGAACAATCACAGCAATGAACCCTTTACTATCCACTCACACACAACTTCATAGCCATGGCTTTCAACCACCATCATCAGTGAAAATAGAACAAGGGTTCAACTTAAGACCAGAAATTCCACCATTTCACCAAATGCATTTCGACCAGTGCTTAATCCAGCATGAAAACCCTAACCCTACAACTACTTTGTTTCCTTCTTTCCATTCCAATGTTTCTCCTCACATGTCTGCCACTGCTTTGTTGCAAAAGGCATCACAAATAGGTGTAACAGTAACGGCACCTTCTCATGGCATGCTTAGACCCCACCACTTGAAGCAGCAGGTTCACGTGCATGAATATTTTAATACAACTGGGTATAATATGGCTTCATCTTCAGCTGTTTCTGGAATGGTTATGCCGTCACGTGAAGAAATAGGAACTGGGTTTGGTCATGGTTTGGCATCTTATGGGAATAAAGCTGCAACTACTTCAGATTACTTGGAAGAATGTGATGCTGCAAACACAGAAGCTGATCAAGAATATTCTCTTTTTAATGATGTGATGGCAAGTACTATGCATTCAGCTAGTGGGTTTGAGGAGGCTATGACTATGAAGGGTATGTTTAATTCTCCAAGAGGTAATGAACTTGTTTCAAAATCAACACTATCACCTGCAGCTGGTGCCAACGATGAAATGACAAGAGATTTTCTGAGCCTTAAAGCATTTTCTCAAAGGGAATTCTTCAATATATCTGAGATTGATCACTTGGGTTCATCATATGGCAAACAAAATCATAACCAAGGACCTTGGCAAGGGTAA 1434 0.4142 MMKGLVVDENMSNLTSASSEISASSGTRNDNGSLHPQYSSTSTNQEPQPKKKRSLPGYPDPEAEVIALTPKTLMTTNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKKKNSKEITRKKVYICPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESARTITAMNPLLSTHTQLHSHGFQPPSSVKIEQGFNLRPEIPPFHQMHFDQCLIQHENPNPTTTLFPSFHSNVSPHMSATALLQKASQIGVTVTAPSHGMLRPHHLKQQVHVHEYFNTTGYNMASSSAVSGMVMPSREEIGTGFGHGLASYGNKAATTSDYLEECDAANTEADQEYSLFNDVMASTMHSASGFEEAMTMKGMFNSPRGNELVSKSTLSPAAGANDEMTRDFLSLKAFSQREFFNISEIDHLGSSYGKQNHNQGPWQG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2773g00002 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Gabi2773g00002 477 MobiDBLite consensus disorder prediction 9 50 - -
Gabi2773g00002 477 FunFam protein indeterminate-domain 12-like 58 127 - -
Gabi2773g00002 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 451 IPR031140 -
Gabi2773g00002 477 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Gabi2773g00002 477 SMART c2h2final6 121 151 IPR013087 -
Gabi2773g00002 477 SMART c2h2final6 79 101 IPR013087 -
Gabi2773g00002 477 SMART c2h2final6 156 176 IPR013087 -
Gabi2773g00002 477 MobiDBLite consensus disorder prediction 1 61 - -
Gabi2773g00002 477 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Gabi2773g00002 477 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
Gabi2773g00002 477 Gene3D Classic Zinc Finger 134 214 - -
Gabi2773g00002 477 Gene3D Classic Zinc Finger 59 126 - -
Gabi2773g00002 477 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2773g00002 Gabi-Chr2773 5678 8242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2773g00002 7 302 IDZ Gene Family AT1G55110 58.036 1.72e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2773g00002 zf-C2H2_jaz 5.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2773g00002 K25870 - vvi:100257789 553.518