Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2769g00013 ATGGATCCAATTCCAAATCCATTCGCACCCAATCATTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACTGATCTCTTCGAATCTCGCTCTTCCGACCGTTCTCGCCCATGTTCCTGCCATGATATAAGCATAAACCCCTTTTCTGGTGTCGTTTGCGATCTTCATCACGGGGAATTAGGGTTAGGGTTAGGGTTTGGAGGTGGCGATGATTCGGTGGGCGATAATTCCGGTGGGCTTAGGGTTGTTGGATTCGGTTCTGATTCAGATTCGAATAGCGAGGAAGGTGAGCTTGATAGAGCTATGGAGTTCAGTTCTGGTGTTGATGGTGATGATGATAGGGTTGGTGTTGGTGGTGCGTTTGATGATTTCGATGTTCGATTGTGTTGGGATAGTTTGTGTTTGGAGGATCAGAGGACACTGAATGAGAGTTTTGAATGGGAGGAGGTAGAAGAAAGGGTGAATGAGGTTGAGGTTGATGGTGAATCAATAGCATCTGGGTTTACGAATAGCGGCGAAGAAGCAATTAGGGACCTCGAATGGGAGATTCTCTTGGCTGTGAACAATTTGGATAGGAATTCTGGTTTGGAACATGATGATTCCAATGGTGCTGATTCGTATTTAGCTGTTCCTGAAGGTTTTTTTTACACTGCTGAGGTTGATGTTCTATTTGGGCAGTTGCTGGAGAATGATAATGGATTGAAGGGTAGTCCTCCGGCCGCGAAAAGTGTTGTGGAGAATCTTCCTCTTGTGGTGGTGGAGGAGTTGCAAGGGAAGAACGTGGTGTGTGCTATTTGCAAAGATGAGATGTTCTTGGAGGAGAAGGTGAGGAGGCTTCCTTGCTCTCATTGTTATCATGGAGACTGCATTTTGCCTTGGTTGAGTATTCGGAATACTTGTCCGGTTTGTCGGTTTGAATTGCCCACAGATGATCCTGATTATGAGCAGAGGAAATGCCAGAGGGCTGCTCATGAACTGTTGGAGCTTGCAGCACAAATGCAATTTTGA 1011 0.4619 MDPIPNPFAPNHSDSDSDSVSCFVTDLFESRSSDRSRPCSCHDISINPFSGVVCDLHHGELGLGLGFGGGDDSVGDNSGGLRVVGFGSDSDSNSEEGELDRAMEFSSGVDGDDDRVGVGGAFDDFDVRLCWDSLCLEDQRTLNESFEWEEVEERVNEVEVDGESIASGFTNSGEEAIRDLEWEILLAVNNLDRNSGLEHDDSNGADSYLAVPEGFFYTAEVDVLFGQLLENDNGLKGSPPAAKSVVENLPLVVVEELQGKNVVCAICKDEMFLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQRKCQRAAHELLELAAQMQF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2769g00013 336 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Gabi2769g00013 336 Pfam Ring finger domain 264 305 IPR001841 -
Gabi2769g00013 336 SUPERFAMILY RING/U-box 251 312 - -
Gabi2769g00013 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 159 309 - -
Gabi2769g00013 336 FunFam E3 ubiquitin-protein ligase RING1-like 227 311 - -
Gabi2769g00013 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 311 IPR013083 -
Gabi2769g00013 336 SMART ring_2 264 304 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2769g00013 Gabi-Chr2769 247697 249275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2769g00013 65 319 C3H Transcription Factor Family AT3G02340 44.203 1.01e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2769g00013 - - gmx:100812037 366.696