Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2769g00002 ATGTCAATGAGCTTGTTTACAAACTTGAACCGCACCGAGATAGTACTACTCAATGCCCCAAACACCATTAGTGCACCCATTAAAAGATGGCACTCTGCTTTCCTTTCCATCTATTGTTCTAGAGCCCTTGTGTCACACTTCATTCTCAACAAAACCAACAAAAAGAAAGAAAAAACCTCACCTTATCATCCATCTTTCACCGTGGTTGATTTGAGTTCACACCAATCCTTTGCTGTTGATCAAACAAGTCTCACTGAGATTGTCAAAGAGAAAAACCTTAAGAGCCTTGAGAAATATGGTGGGGTTGAAGGGTTGGCTTCAATTCTTGAAACCAACGTTGAATATGGTATCAAAGGTGATGATGATGCTGATGCTGAAGACATTGCACGTAGACAAGAAGTGTTTGGTTCCAATAGTTACAACAAACCTCCTTCTAAAGGCTTCTTTCATTTTGTGTTGGAAGCCTTTAAGGATGTGACCATTCTCATCCTCTTGGCTTGTGCAGCACTTTCCCTTGGCTTTGGCATTAAGGAGCATGGCCTCAAAGAAGGTTGGTATGATGGTGGCAGCATTTTTCTTGCTGTGTTTATTGTCATTTCCATGTCTTCCATAAGCAACTTTAGACAGAACAGACAATTTGACAAGTTATCTCAAGTGAGCAATGATATACAAATTGATGTGGTGAGAAGTGGTAGGCGCCAACAGATTTCAATCTTTGAAATTGTGGTTGGTGATGTCATTTGCTTGAAGATTGGAGATCAAGTACCAGCGGATGGATTATTCATAGATGGACATTCATTGAGAGTGGATGAATCAAGCATGACTGGGGAGAGTGATCATGTGGAGGTTAATAGAAATCACCACCCATTCTTGTTCTCTGGCACCAAAGTTGCTGATGGGTATGCTAAAATGCTAGTTACCTCAGTTGGTATGAACACAACATGGGGCCAAATGATGAGTTCAATCAGCAAGGATACTGATGAGCAAACTCCTTTGCAAGCAAGGCTAAACAAGCTTACCTCATTCATTGGGAAGGTTGGTTTGTCTGTGGCTTTTCTAGTCCTTGTTGTTTTGTTGATTCGTTACTTCACAGGAAACACAAAGGATGAGAATGGTGTTAGAGAGTTCAATGGAAGCAAGACTAAGTTCAATGAGATAATGAATGCAGTGGTTGGAATTGTTGCTGATGCGGTAACTATTGTTGTTGTTGCAATCCCTGAGGGTCTGCCACTAGCAGTGACTCTTACATTGGCTTATTCAATGAAGAAAATGATGGCAGACCAAGCAATGGTGAGAAAACTATCTGCATGTGAGACTATGGGGTCTGCTACAACCATTTGTACTGACAAAACAGGCACACTCACGCTCAACCAGATGAAGGTGACCAAGTTTTGGCTTGGCCTAGAACCTGTAGCAGTGGGTGCATACTCTTCAGTTGCTCCATATGTTCTTCAATTGATCCAAGAAGGAGTGGCTCTCAATACAACTGGTAGTGTGCAAAAGTCTAAATCAGATTCTGAGTTTGAATTTTCAGGTAGTCCCACAGAAAAAGCAATCCTATCATGGGCTGTTTTGGAATTGAACATGGAGATGGAGCACTTGACAAAAAGCTGTTCTATCCTTCAAGTTGAGACCTTCAACTCAAAGAAGAAAAGAAGTGGGGTTTTGCTGAGAAGGAAGGAAGACAACAAAGTTCATGCACACTGGAAAGGAGCAGCAGAGATGGTGCTAAAATTGTGTTCAAGATATTATGATGCTTCTGGCATTGTGAAAGATCTTGACAATGATAGTAAGTTGAAATTTGAACACATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTTGGAGATGAAGAAGGTAGCACAATGGTAAAAGACAATGGTTTAACCTTGTTAGGACTTGTGGGAATTAAGGATCCATGTCGTCCAGGTGTGAAGAAAGCTGTGGAAGCTTGCCAACATGCTGGTGTAAATGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAAAGCTATAGCAACAGAATGTGGCATACTTAGGCCTAATCAGGACACAGATGGAGCAGTGATTGAAGGAGAGGAATTTAGAAACTTCACACCTGAGGAAAGATTGGAGAAGGTTGACAAAATCTGTGTGATGGCTAGATCCTCTCCTTTTGATAAACTTTTAATGGTTCAATGCCTAAAACAGAAAGGCCATGTAGTTGCTGTTACTGGGGATGGCACAAATGATGCACCAGCACTCAAGGAAGCTGATATTGGACTTTCTATGGGAATTCAAGGCACTGAAGTTGCCAAAGAGAGCTCAGATATTGTTATATTGGATGACAATTTTGCTTCTGTTGTCACAGTCTTAAGGTGGGGAAGATGTGTTTATAATAACATCCAAAAGTTCATTCAGTTTCAATTGACAGTGAATGTTGCAGCACTTGCAATCAACTTTGTAGCAGCAGTGTCAGCTGGGGAAGTGCCACTAACAGCAGTGCAATTGTTATGGGTGAATTTGATCATGGACACATTAGGTGCTTTGGCTCTTGCAACAGAAAAACCAACCATGGAGTTGATGGAGAAACCACCAGTAGGTAGAACCAAACCTCTTATTACTAATATCATGTGGAGGAATCTATTAGCTCAAGCTTTGTATCAGATAGTAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCCATCTTTGGTGTGACATCAGAGGTAAATGACACATTGATTTTCAATACTTTTGTTCTTTGCCAAGTCTTCAATGAGTTCAATGCAAGGAACATGGAGAAGAAGAATGTTTTCAAGGGAATACATAGGAGCAAGTTGTTTTTGGGAATTATTGGCATAACAATAATACTTCAGGTTGTGATGGTTGAGTTTCTCAAGAAGTTTGCTGATACAGAGAGGTTAAACTGGGGCCAATGGGCCCTTTGTATTGGTCTTGCTGCAATTTCATGGCCAATTGGATGGGTTGTGAAGTTCATACCTGTCTCAGATAAACCATTGCTCAATTTTTTGAGCATGATGAAGACTTAG 3057 0.4073 MSMSLFTNLNRTEIVLLNAPNTISAPIKRWHSAFLSIYCSRALVSHFILNKTNKKKEKTSPYHPSFTVVDLSSHQSFAVDQTSLTEIVKEKNLKSLEKYGGVEGLASILETNVEYGIKGDDDADAEDIARRQEVFGSNSYNKPPSKGFFHFVLEAFKDVTILILLACAALSLGFGIKEHGLKEGWYDGGSIFLAVFIVISMSSISNFRQNRQFDKLSQVSNDIQIDVVRSGRRQQISIFEIVVGDVICLKIGDQVPADGLFIDGHSLRVDESSMTGESDHVEVNRNHHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISKDTDEQTPLQARLNKLTSFIGKVGLSVAFLVLVVLLIRYFTGNTKDENGVREFNGSKTKFNEIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPVAVGAYSSVAPYVLQLIQEGVALNTTGSVQKSKSDSEFEFSGSPTEKAILSWAVLELNMEMEHLTKSCSILQVETFNSKKKRSGVLLRRKEDNKVHAHWKGAAEMVLKLCSRYYDASGIVKDLDNDSKLKFEHIIQGMAASSLRCIAFAHVEVGDEEGSTMVKDNGLTLLGLVGIKDPCRPGVKKAVEACQHAGVNVKMITGDNVFTAKAIATECGILRPNQDTDGAVIEGEEFRNFTPEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTMELMEKPPVGRTKPLITNIMWRNLLAQALYQIVVLLTLQFKGESIFGVTSEVNDTLIFNTFVLCQVFNEFNARNMEKKNVFKGIHRSKLFLGIIGITIILQVVMVEFLKKFADTERLNWGQWALCIGLAAISWPIGWVVKFIPVSDKPLLNFLSMMKT 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2769g00002 1018 PRINTS P-type cation-transporting ATPase superfamily signature 641 652 - -
Gabi2769g00002 1018 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Gabi2769g00002 1018 PRINTS P-type cation-transporting ATPase superfamily signature 771 783 - -
Gabi2769g00002 1018 PRINTS P-type cation-transporting ATPase superfamily signature 270 284 - -
Gabi2769g00002 1018 PRINTS P-type cation-transporting ATPase superfamily signature 747 766 - -
Gabi2769g00002 1018 PRINTS P-type cation-transporting ATPase superfamily signature 663 673 - -
Gabi2769g00002 1018 Gene3D - 444 792 IPR023214 -
Gabi2769g00002 1018 SFLD p-type atpase 429 800 IPR044492 -
Gabi2769g00002 1018 SMART Cation_ATPase_N_a_2 98 176 IPR004014 -
Gabi2769g00002 1018 Gene3D - 154 1002 - -
Gabi2769g00002 1018 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 453 653 IPR023299 GO:0000166
Gabi2769g00002 1018 Pfam Cation transporting ATPase, C-terminus 832 1002 IPR006068 -
Gabi2769g00002 1018 SFLD Haloacid Dehalogenase 429 800 - -
Gabi2769g00002 1018 FunFam Calcium-transporting ATPase 457 648 - -
Gabi2769g00002 1018 FunFam Calcium-transporting ATPase 195 323 - -
Gabi2769g00002 1018 FunFam Calcium-transporting ATPase 642 792 - -
Gabi2769g00002 1018 Gene3D - 457 648 IPR023299 GO:0000166
Gabi2769g00002 1018 CDD P-type_ATPase_Ca_PMCA-like 130 880 - -
Gabi2769g00002 1018 Pfam E1-E2 ATPase 224 425 - -
Gabi2769g00002 1018 Gene3D - 126 323 - -
Gabi2769g00002 1018 SUPERFAMILY HAD-like 445 852 IPR036412 -
Gabi2769g00002 1018 SUPERFAMILY Calcium ATPase, transduction domain A 224 321 IPR008250 -
Gabi2769g00002 1018 PRINTS H+-transporting ATPase (proton pump) signature 747 763 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2769g00002 1018 PRINTS H+-transporting ATPase (proton pump) signature 779 804 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2769g00002 1018 PRINTS H+-transporting ATPase (proton pump) signature 601 619 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2769g00002 1018 FunFam Calcium-transporting ATPase 764 1006 - -
Gabi2769g00002 1018 Pfam haloacid dehalogenase-like hydrolase 444 761 - -
Gabi2769g00002 1018 SUPERFAMILY Calcium ATPase, transmembrane domain M 99 1004 IPR023298 -
Gabi2769g00002 1018 NCBIfam HAD-IC family P-type ATPase 720 828 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2769g00002 1018 NCBIfam HAD-IC family P-type ATPase 390 467 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2769g00002 1018 Pfam Cation transporter/ATPase, N-terminus 99 171 IPR004014 -
Gabi2769g00002 1018 PANTHER CATION TRANSPORTING ATPASE 67 1005 - -
Gabi2769g00002 1018 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Gabi2769g00002 1018 NCBIfam calcium-translocating P-type ATPase, PMCA-type 77 1004 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2769g00002 Gabi-Chr2769 18003 21059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2769g00002 15 1017 Primary Pumps ATPases AT3G22910 69.436 0.0 1348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2769g00002 K01537 - gmx:100793918 1706.81