Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2767g00001 ATGTCTTCTGCCGGCGGCGGCGTTACCTCCGACGCTCCTCAGCAATATTTCTGCTATCAGTGCAACCGCACTGTCACCTTTACTCCTTCCTCTGATCTCGTCGTTTGCCCCGATTGCAACGGTGGCTTCATCATGGAAGTGGAAAATCCAATTCCAAACAATCCTCATTCCTTGTCTTTCACCTACGAGTTTGGCAGCGACGATCTCCCCACTCTCTTCGGCGGTCGATCGTCCCCATTCGGAGATGCCGACGCCTTTAACCCTTTGGTTTTCCTTCAGAACTACATTCAAACCCTGAGGGCTGGTGGCGCTAATGTTCAGTTCGTGATCGACAACTCGGGGGACCCTAGTGGAACATTTCGTCTCCCCACCAATCTCAACCTTGGCGATTACTTTTTCGGGCCCGGTCTGGAGCAATTGATTCAGCACCTTGCGGAGAACGATCCCAACCGGTACGGGACACCCCCAGCCTCCAAGTCTGCTATCGAGGGGCTCCCCAACATCTCGATTACAGAAGAATTGTTGGCTTCGGATTCGTCGCAGTGTGCAGTGTGTAAAGACACATTCGAGCTCCGGGAATTGGCCAAGCAGATGCCGTGTAAACACATTTATCATTCCGATTGCATCCTGCCCTGGTTGGAATTGCACAATTCTTGTCCCGTGTGTCGTCATGAGTTACCAACTGATGATCCTGACTATGAGCAAAGGGCTCCAGAGAATCGGGGCCAATCTGTAGGTGTAGGTGCCGCTGATTCGTTTGGAGAGTCACCCAGGGAGCAGAGGTTTAGGGTTCCTTTGCCATGGCCCTTTAGGCAGTTTTCTTCAGTTGCTGAGACAAGCAATGTTAGGAATGCCAATAACAGCCAAAACAGTGATGGGGAATCAAATTGTAATTTTGAATCAGAAACCAGGCAAGAAGACCTCGATTGA 930 0.5086 MSSAGGGVTSDAPQQYFCYQCNRTVTFTPSSDLVVCPDCNGGFIMEVENPIPNNPHSLSFTYEFGSDDLPTLFGGRSSPFGDADAFNPLVFLQNYIQTLRAGGANVQFVIDNSGDPSGTFRLPTNLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASKSAIEGLPNISITEELLASDSSQCAVCKDTFELRELAKQMPCKHIYHSDCILPWLELHNSCPVCRHELPTDDPDYEQRAPENRGQSVGVGAADSFGESPREQRFRVPLPWPFRQFSSVAETSNVRNANNSQNSDGESNCNFESETRQEDLD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2767g00001 309 ProSiteProfiles Zinc finger RING-type profile. 182 223 IPR001841 -
Gabi2767g00001 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 227 - -
Gabi2767g00001 309 Pfam Ring finger domain 181 223 IPR001841 -
Gabi2767g00001 309 CDD RING-H2_RNF126-like 181 223 - -
Gabi2767g00001 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 229 IPR013083 -
Gabi2767g00001 309 SUPERFAMILY RING/U-box 162 230 - -
Gabi2767g00001 309 Pfam zinc-ribbon 14 46 IPR039525 GO:0061630
Gabi2767g00001 309 MobiDBLite consensus disorder prediction 230 259 - -
Gabi2767g00001 309 FunFam E3 ubiquitin-protein ligase RING1-like 143 229 - -
Gabi2767g00001 309 SMART ring_2 182 222 IPR001841 -
Gabi2767g00001 309 MobiDBLite consensus disorder prediction 279 309 - -
Gabi2767g00001 309 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2767g00001 Gabi-Chr2767 23811 31510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2767g00001 140 236 C3H Transcription Factor Family AT5G15820 52.577 8.18e-34 125