LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2755g00015	ATGAACGACCTATTCTCAAGCTCCTTCAAAAAATACAGTGACTTGAAGCAGCAATCATACCTTGATGATGTGGAGGCTGGGAAGGAAGGCATCAATCTTGATAAATTCTTTGAAGATGTGGAGAATGTAAAAGAAGAAATGAGAGCAGTTGAAAAGCTCTATAGACAATTGCAAGAGGCTAATGAAGAGAGCAAAATTGTTCACAATGCTAAAACAATGAAAGAACTTCGAGCCAGAATGGATAAAGATGTTGAGCAGGTTCTAAAACGTGTCAAAATCATCAAAGGAAAGCTTGAAGCTTTAGAACGTTCTAATGCAGCAAATAGAAACCTTCCAGGGTGTGGTCCAGGTTCTTCAGCAGATAGAACCAGAACTTCTGTGGTTAGTGGCTTGGGAAAGAAACTCAAGGATATGATGGATGATTTTCAAGGGTTAAGAGCAAGAATGCAACTTGAGTATAAGGAAACAATAGAAAGAAGGTATTTCACAATAACAGGAGAGAAAGCAGATGAAGAAACTATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAGTTTTCTTCAGAGAGCAATTCAAGAACAGGGTAGGGGTCAGATAATGGATACCATATCAGAAATTCAAGAAAGACATGATGCTGTTAAGGAAATAGAGAAAAACTTGATTGAACTTCATCAAGTGTTTTTGGACATGGCAGCTTTGGTAGAGTCTCAAGGTCAACAACTTAATAACATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTAAGAAGAGGCACAGAACAACTTCATGAAGCTAGAGATTATCAAAAGAGCTCAAGAAAATGGACATGTTATGCCATAATTCTTGTTATTGTCCTCATTGTTGTGCTCCTATTTCCTCTCTTGACATCACTTTTACCTCATTTGTTAACATGA	915	0.3727	MNDLFSSSFKKYSDLKQQSYLDDVEAGKEGINLDKFFEDVENVKEEMRAVEKLYRQLQEANEESKIVHNAKTMKELRARMDKDVEQVLKRVKIIKGKLEALERSNAANRNLPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQLEYKETIERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEARDYQKSSRKWTCYAIILVIVLIVVLLFPLLTSLLPHLLT	304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2755g00015	304	Gene3D	-	194	295	-	-
	Gabi2755g00015	304	FunFam	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	30	160	-	-
	Gabi2755g00015	304	Coils	Coil	33	70	-	-
	Gabi2755g00015	304	FunFam	Syntaxin 132	196	296	-	-
	Gabi2755g00015	304	Coils	Coil	84	104	-	-
	Gabi2755g00015	304	PANTHER	SYNTAXIN	41	287	IPR045242	-
	Gabi2755g00015	304	SMART	SynN_4	28	154	IPR006011	GO:0016020
	Gabi2755g00015	304	SUPERFAMILY	t-snare proteins	31	258	IPR010989	GO:0016020\|GO:0016192
	Gabi2755g00015	304	Pfam	Syntaxin	35	238	IPR006011	GO:0016020
	Gabi2755g00015	304	Gene3D	-	33	160	-	-
	Gabi2755g00015	304	Pfam	SNARE domain	240	291	IPR000727	-
	Gabi2755g00015	304	CDD	SynN	33	190	IPR006011	GO:0016020
	Gabi2755g00015	304	CDD	SNARE_syntaxin1-like	202	262	-	-
	Gabi2755g00015	304	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	203	265	IPR000727	-
	Gabi2755g00015	304	SMART	tSNARE_6	198	265	IPR000727	-
	Gabi2755g00015	304	ProSitePatterns	Syntaxin / epimorphin family signature.	209	248	IPR006012	GO:0005484\|GO:0006886\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2755g00015	Gabi-Chr2755	209514	210428	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2755g00015	1	303	SNARE and Associated Proteins	AT1G61290	78.878	0.0	504

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2755g00015	K08486		-	gmx:100805869	512.301