Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2754g00039 ATGGCGGAGCTTCGTAGTGGACCGCGACGTCGTCGGGCTCCGGTAGGCCCTAGAAGCTGCGAACCACTGTCTCCGGCGGCCAAATACGTGAAGACTCGGGCTGCAGTCGCCAGGGAAGTTGCGGCAGCAGAGGCGGCGGTGGTTGAGAGGCCGAGGACTCGATTGGTGGCCAAGAAATTAAAGCAGGAGAAACCGGTGATCGTGATATCGGAGAAGGAAGAAATTGAAGGCGTGATGGGTGATGATAGTGGTGGTTTAAGCGCTAATAAAGGCGTTGCTCAAGAGGATGAGGGCAACACTCCTCCTTTTCCTGAGAGGGTTCAAGTCGGAGGATCGCCTATATACAAAGTGGACAGGAAACTGGGTAAAGGTGGCTTTGGACAGGTTTTTGTTGGCCGTCGAGTCACAGGTGGTAATGACCGTACTTCTGGCCCTGGTGCCACTGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCGTATGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATACCTAAAGTACATTATAAAGGAAGGCAAGGAGAACATTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTTAAACCAAGCGATGTCTGCTGAAATGGTTTCATGTATTGCTGTTGAGTCCTTGTCGATCCTGGAGAAGATGCACTTGAGAGGATATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTAGGTCAGCCAGCTACACTGCAAGAGAAGAAATTGTTTCTTGTTGACCTTGGATTAGCAACCAAGTGGAGGGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTCCTTCATAAAGGCCGGTTACCATGGCAAGGATTTCAGGGTGATAACAAATCCTTCCTTGTCTGCAAAAAGAAGATGAGAACATCTCCTGAGATGCTATGCTGCTTCTGCCCTCCACCTTTTAGGCAGTTTCTTGAGATTGTAGTGAACATGACATTTGATGAAGAACCTAGCTATTCCAAGCTAATATCTTTGTTTGATGATATGCTTGGACCGAATCCTGCATTGCGGCCTATTAATACTGAAGGTGCTCAAAAGGCTGGGCAAAAGCGGGGTAGATTGAATATTGAGGAAGAAGATGATTTGCAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAGAGGTATCATTACAATGTAGCTGATTCAAGATTAGCACAGCATGTGGATAGAGGGATTGCAGATGGCCTTCTTATTAGCTGTGTGGCTTCTTGTTCCAATCTTTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAATTGTCACCTTTTTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGCTAATAATGGGAGCTCTCTTGTGGTAATGTCAAAAGGCACGCAGTACACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGACCACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTGATCAGGTCGTAGAACTTGATTTTCTCTATCCTAGCGAAGGCATCCACAGACGTTGGGATAATGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGCATTCCGAGGCGCAAGCTTGGTGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTATCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGA 2034 0.4533 MAELRSGPRRRRAPVGPRSCEPLSPAAKYVKTRAAVAREVAAAEAAVVERPRTRLVAKKLKQEKPVIVISEKEEIEGVMGDDSGGLSANKGVAQEDEGNTPPFPERVQVGGSPIYKVDRKLGKGGFGQVFVGRRVTGGNDRTSGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEHYVMVMDMLGPSLWDVWNSLNQAMSAEMVSCIAVESLSILEKMHLRGYVHGDVKPENFLLGQPATLQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGFQGDNKSFLVCKKKMRTSPEMLCCFCPPPFRQFLEIVVNMTFDEEPSYSKLISLFDDMLGPNPALRPINTEGAQKAGQKRGRLNIEEEDDLQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADSRLAQHVDRGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMTTAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRKLGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2754g00039 677 ProSiteProfiles Protein kinase domain profile. 115 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2754g00039 677 Pfam Protein kinase domain 115 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2754g00039 677 Gene3D Transferase(Phosphotransferase) domain 1 94 434 - -
Gabi2754g00039 677 SUPERFAMILY Protein kinase-like (PK-like) 115 399 IPR011009 -
Gabi2754g00039 677 PANTHER CASEIN KINASE-RELATED 115 637 - -
Gabi2754g00039 677 SMART serkin_6 115 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2754g00039 677 FunFam casein kinase 1-like protein HD16 88 433 - -
Gabi2754g00039 677 MobiDBLite consensus disorder prediction 78 104 - -
Gabi2754g00039 677 CDD STKc_CK1 115 390 - -
Gabi2754g00039 677 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2754g00039 677 ProSitePatterns Protein kinases ATP-binding region signature. 121 153 IPR017441 GO:0005524
Gabi2754g00039 677 MobiDBLite consensus disorder prediction 1 16 - -
Gabi2754g00039 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2754g00039 Gabi-Chr2754 302455 314618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2754g00039 103 273 EF-hand Containing Proteins AT4G21940 27.624 2.69e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi2754g00039 Pkinase 1e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2754g00039 - - gmx:100819969 1221.45