Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2754g00032 ATGGCATCAACATCTTGTCTCAGCAACAGCCTAATACCCATGAAAGAAGCAGTTCCAATGTCTAATTTGTATCCTCCACCTCTTGCAAAATATGAGGATGTTACAACAAACCCCAAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCTGCTATGGGTACCAAGTTCATGATTCCAATTATTGGCGGAAAAGAACTTGACTTGTGTCGCCTCTTCCTTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATTAGAGAGAGAAGATGGAAAGAAGTAACTGCAGTTTTTAATTTTCCAACAACAGCCACGAATGCTTCCTATGTGCTGCGGAAGTACTATACTTCATTGCTTTACCACTACGAACAAATCTACTATTTTAAGGCCAATCGATGGACCCCTGCAACTTCTGATACTCTGCAGAGTCATTCAACCATGCCAGTTCCGGCTCAAAGAACACAATTTTTGCAGCCTTCTCCAGGAATGCAATCAGCTGTCTTTCAACAGTCAAGGGTCAATGCTGCTGAATCACCTGAAGTGTCTCTGGCAGGATCCCCAGTGATTGGAGTCATTGATGGGAAATTTGAAGGTGGGTATCTAGTTTCTGTTTCAGTAGGTTCAGAGAAGCTCCAAGGTGTACTTTATTATGAGGCTCCACAAATCCCTGATTTGCCTGCATCTGCCTCACATGGTCAAAGCATATTTGTTAAGAACAACAATGCCTCTGCTTCGTTGGGGGTCCATCGCCGTCGTCGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCAAACAGAAGTGGATACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAGCTACAACACCAAGCCAAGGACAGGGATATTAGTAGGATGATTGGTGAACTCTGGAACAAATTAAAAGAGCCTGAAAGATCAGTTTATCAAGAGAAGGCTGTTAAGGATAAAGAGAGGTATAAAGCAGAAATGGAGGATTATCGTGAGAAACTGAAGATGAGCCATGTTATCAGTGATGCTGTGCCACTGCAACAACTGCTTCCTCAAGCAGATACAACTTTGGTGGATGTGGACATAAAATTGTTAGGTTCTCCTCAAACACCTGAGGAGAGCAGTTCTGTTGGAAGTGACTGTGAAGATGATATCAATATGGATGCTTCTCCTGGAGTAGCAGTGGCTGCTGATGCTACCTACTTGGGTTCAAACAAGTCATCCAAGGAGGGGGATTATGAGCTTCTTCGCCATTGTGAGAGAGAAGGGAATGCTGGAGATCAACAGCCTCCAAAGATGAACGAGAGCAAGAATATGCTGGAACTATTTTAG 1338 0.4342 MASTSCLSNSLIPMKEAVPMSNLYPPPLAKYEDVTTNPKLFMFTLEKLHAAMGTKFMIPIIGGKELDLCRLFLEVTSRGGIEKLIRERRWKEVTAVFNFPTTATNASYVLRKYYTSLLYHYEQIYYFKANRWTPATSDTLQSHSTMPVPAQRTQFLQPSPGMQSAVFQQSRVNAAESPEVSLAGSPVIGVIDGKFEGGYLVSVSVGSEKLQGVLYYEAPQIPDLPASASHGQSIFVKNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLQHQAKDRDISRMIGELWNKLKEPERSVYQEKAVKDKERYKAEMEDYREKLKMSHVISDAVPLQQLLPQADTTLVDVDIKLLGSPQTPEESSSVGSDCEDDINMDASPGVAVAADATYLGSNKSSKEGDYELLRHCEREGNAGDQQPPKMNESKNMLELF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2754g00032 445 MobiDBLite consensus disorder prediction 422 445 - -
Gabi2754g00032 445 SUPERFAMILY ARID-like 32 132 IPR036431 GO:0003677
Gabi2754g00032 445 SMART hmgende2 265 334 IPR009071 -
Gabi2754g00032 445 MobiDBLite consensus disorder prediction 246 260 - -
Gabi2754g00032 445 SMART bright_3 36 127 IPR001606 GO:0003677
Gabi2754g00032 445 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Gabi2754g00032 445 SUPERFAMILY HMG-box 254 337 IPR036910 -
Gabi2754g00032 445 Coils Coil 315 335 - -
Gabi2754g00032 445 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Gabi2754g00032 445 Gene3D High mobility group box domain 249 344 IPR036910 -
Gabi2754g00032 445 FunFam High mobility group B protein 15 29 142 - -
Gabi2754g00032 445 MobiDBLite consensus disorder prediction 245 272 - -
Gabi2754g00032 445 FunFam High mobility group B protein 15 248 343 - -
Gabi2754g00032 445 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Gabi2754g00032 445 SMART ARID_2 32 122 - -
Gabi2754g00032 445 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 367 - -
Gabi2754g00032 445 CDD HMG-box_AtHMGB9-like 266 332 - -
Gabi2754g00032 445 Gene3D - 28 141 IPR036431 GO:0003677
Gabi2754g00032 445 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Gabi2754g00032 445 Pfam HMG (high mobility group) box 266 333 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2754g00032 Gabi-Chr2754 279949 283032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2754g00032 1 366 ARID Transcription Factor Family AT1G04880 57.909 4.76e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gabi2754g00032 ARID 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2754g00032 - - gmx:100783284 556.984