LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2754g00029	ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGAAGAAGAAGAGTGACAAGGTCTAGATTTTCCTTCCACAATGGTGCTTTGAGTGAGCCACTTTACTCTTTCGAAGAGAGACTTTGTGTATCAAGTGAAAGAATCAAAACACACAGAACAAAATCTGATGCCTCACAATCTCAGATTAGAAGTGGACCGCTACAAAGTGATACTCATACTGCTAAGAACCGGAGGCCAAGGGATAGCCTCTTCATAAGAGACAAAATGGATGAACGTTTGAAGAATGAAACTGAGAAGAAACGTTCAACCGATAAAAAATCAGGCAAAGGAATTGATAACAGTTCATCAGAATACAAGCCAAGGTATGAGATTGTTGAGGTGAGTGAGCAAGAAGATAGCATAGTTGAAGATATTTATTCAGACCAAGTGTCTAATTCTAGAAGAGGCAAAGAAAAGAATTTCAATGAACTTGTGGGAAAGCAAGTCAAGGACCCAAAAATGAGTAAGATGCATAGCAGAAGTTCCAGTAATCATATGCTTGGACACTGGAGTGGGAATAGAAAGAGTATAAAATCCCAGGAGGACTCGTACACTAGATCTAATAGCAAAAACATTGAAGATGGCAGCAATAAAAATAGAGATCACGCTATGCAAATAGCTTCTAGTTTCGCTCTTGATGAAGTTGCTGTCCAAGCAATAGTTTCCATTCTAAATGGGTATATAAAACGATTTCTAAAAGATGAGGACTTTCGGTCTACATTGCGTCACAATTGTTTCTCCTCCTTGAATTTTGTTGAACTGGAAGAAGAGAACAATACTGAGACCAAAGTCATAAGAAGTCTCGAGCATGCAATTGAGACCGTAGAACAAACTGCTGAGGAGCCTATATCTACCACATATCTGAAGAGAGCCACCATGCAGCTAAGCATTATTACAGGTTTGAGTTTAAATGATTTGAAGTATGGGTTTACATGTGGTATCCCGAATTATAAGCTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTATATATGATACAGAGAAAAAAGGAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTCTGTGATTCACCTTTTCAGGCAAGGACAATATTGTTGCCTGAACTGTGGGAGCACCTATTTTCTCCACAACTTTCCCATTTGAAGGCATGGTGCAACAAGGAAGCTGAAATTCTAGTGGATGCAGCAAGCAAAACAGGAAAGCTGAAGCTTCTTCAAAAAGTGTATGATGAACATTTGGATTCCGGAACTCATACATTTGCCGTATACTACAAAGATTGGCTCGCTGAAGGAGTAGAATCTCCATCTATTCCTTCTATCGGCATTCCTTCAATATCTGTTACAGGAAGTCAACAGGTTAGTTCACATGGTCATTCTTCGGAGTCTGCTAGCTCCCCTGAACCATTCTCACCACAGCCACTGGTCAGCAAGAAACTATATGATTCTGTCTTTGGGAATTCGAGTAAACCTGGAGTTTATGAAGTCAAAGATAATGAGGATGAAGATAAACTAGAAAATTGCGTGAGAGGCTCTTATGGTTCAACTATTGTTGAACAAACAATAGTGTATGAGTCTGAAACTGTTAAATTTACGGATCAAGATGTTGAAGATTTCACTCAAAGTGTACTAGTCGGTGCATTCCATCCTCAGAAAGGAACTTCAATGATGGCTGTAGAAGAATGGCAAGAAACGAATCTCAGCAATGAAATTAATAACTCTTTCTCCATACAAACTAATTTAAACAGCGGCACAATTGATGCTCAACCACATGGAAAACCAAATAAGATAAGCTCTGCAGTTGAAGGATCATTTTTTCCAAGCATTCCACAGGAATTTATTTGTCCTCTTAATGGAAATCTCTTTGAGGAACCAGTAACTCTAGAGACTGGTCAAACCTTTGAAAGAGAAGCCATCAAAGCATGGTTTGAAAAGGGAAACAGAACATGCCCGGTAACAGGAAATACCTTAGAATGTGTAGTGATGCCACTTACCAACCTTATTTTGAAGCGTTTGATCGATAATTGGAAGTCAGAACACTTTAGTCACCTTCTGGATTTTGCTTTTCAAACAGTGGGAAATTCAAAGGAACTTAAGTTGAAAAAGAGGGATGAGGCTACCGTTTTCAAGTTAAAGAGTCTTCTCTCATCTTTGCAAGAAGAGGACAAATCAACTTATGCTAAGCGTCTCATCTCTTTAGGAGTTCTTTCATTTCTGTTAAGGAGGTTTGAACTGGGAAATGTGGAAGAAAAATCACAAGTGTTGTCACTCTTGATAAACTGTATTCAAGCAGACTCAGATTGTATATTTCAGATAGCAAAGAGTATTGACAGAAAATGTCTTTGTCAGCTTCTTCACAGCAAGGAGGTTACCTCAATAACAAATGCAATAGTATTCCTTACTGAGCTTGTATCGATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTAGCTTGGCGGGTGAAGATGTATTTAATACAATGCATGTTCTGCTCATTTATCTCGCCAATTCTTCTCCGCATGAAAAGCCTCTAATTGCTGTCCTTTTGTTACACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGATGGCTGTGAATGCCATTGCAGTGGGACTTGATGCCAGCTTAAATGATGAGAAGGCCCGAGTAAAGTGTTGCAGAGCTCTTTTAATCTTGTGTGGGCATTTTTCTTCAACTGGAAAGACACAGACCATGAGTAGCATCTTAAAACAAGCAGGTTATAATAATGATAGCTCACAAGTGAAACCTCCTAGCCATGAAGAAGAAGGCCAGCATTCAGATGTAACCATTTCATTGGAAGATGAAGAAGAAAGGGGTGAAGAGTTGCAAATGAACTTGTTAGAATCATTGATTGGTAATGGAGAAAGCCCATTTTTGAAGACTATATCTAGTTGTTTAGATTCTAGACACCTAGATTTGGTGAGGGCGTGTCTAATAACTGTTACATGGTTGAGCTCCTCACTTTGTACACTATTTAATGCTGGAGTGCATCTTCCTGCCCTCTTAACCATCATCTCTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGTTCAAGACTCTTGCATCTATGTCCTTACTTAATTTCAGTAAAATATCAGAATGTAGAACTCTTCTGAAGACTATGGCAGAAGATATTGCTCCCCTTCTTCATGGACTTATTGATGTAACATGGCCTGCAAAGCAGCTGCATGCCATTGTGTCTGGGGAGAATCTGTAG	3282	0.3937	MASSLEELLAEEGFKGRRRVTRSRFSFHNGALSEPLYSFEERLCVSSERIKTHRTKSDASQSQIRSGPLQSDTHTAKNRRPRDSLFIRDKMDERLKNETEKKRSTDKKSGKGIDNSSSEYKPRYEIVEVSEQEDSIVEDIYSDQVSNSRRGKEKNFNELVGKQVKDPKMSKMHSRSSSNHMLGHWSGNRKSIKSQEDSYTRSNSKNIEDGSNKNRDHAMQIASSFALDEVAVQAIVSILNGYIKRFLKDEDFRSTLRHNCFSSLNFVELEEENNTETKVIRSLEHAIETVEQTAEEPISTTYLKRATMQLSIITGLSLNDLKYGFTCGIPNYKLSACAHLYLSVVYMIQRKKEVSAKHLLQVFCDSPFQARTILLPELWEHLFSPQLSHLKAWCNKEAEILVDAASKTGKLKLLQKVYDEHLDSGTHTFAVYYKDWLAEGVESPSIPSIGIPSISVTGSQQVSSHGHSSESASSPEPFSPQPLVSKKLYDSVFGNSSKPGVYEVKDNEDEDKLENCVRGSYGSTIVEQTIVYESETVKFTDQDVEDFTQSVLVGAFHPQKGTSMMAVEEWQETNLSNEINNSFSIQTNLNSGTIDAQPHGKPNKISSAVEGSFFPSIPQEFICPLNGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLECVVMPLTNLILKRLIDNWKSEHFSHLLDFAFQTVGNSKELKLKKRDEATVFKLKSLLSSLQEEDKSTYAKRLISLGVLSFLLRRFELGNVEEKSQVLSLLINCIQADSDCIFQIAKSIDRKCLCQLLHSKEVTSITNAIVFLTELVSMKRRKDVTSFISSLAGEDVFNTMHVLLIYLANSSPHEKPLIAVLLLHFDLLVEPQKFSIYREMAVNAIAVGLDASLNDEKARVKCCRALLILCGHFSSTGKTQTMSSILKQAGYNNDSSQVKPPSHEEEGQHSDVTISLEDEEERGEELQMNLLESLIGNGESPFLKTISSCLDSRHLDLVRACLITVTWLSSSLCTLFNAGVHLPALLTIISQLKGILENGELEFKTLASMSLLNFSKISECRTLLKTMAEDIAPLLHGLIDVTWPAKQLHAIVSGENL	1093

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	59	74	-	-
	Gabi2754g00029	1093	CDD	RING-Ubox_PUB	618	666	IPR045210	-
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	75	114	-	-
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	49	119	-	-
	Gabi2754g00029	1093	Pfam	U-box domain	617	688	IPR003613	GO:0004842\|GO:0016567
	Gabi2754g00029	1093	PANTHER	OS04G0584500 PROTEIN	604	1091	-	-
	Gabi2754g00029	1093	SMART	Ubox_2	620	684	IPR003613	GO:0004842\|GO:0016567
	Gabi2754g00029	1093	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	616	691	IPR013083	-
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	174	189	-	-
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	458	480	-	-
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	929	949	-	-
	Gabi2754g00029	1093	SUPERFAMILY	ARM repeat	677	1075	IPR016024	-
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	935	949	-	-
	Gabi2754g00029	1093	MobiDBLite	consensus disorder prediction	163	214	-	-
	Gabi2754g00029	1093	ProSiteProfiles	U-box domain profile.	616	691	IPR003613	GO:0004842\|GO:0016567
	Gabi2754g00029	1093	SUPERFAMILY	RING/U-box	611	688	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2754g00029	Gabi-Chr2754	230834	240662	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2754g00029	616	688	U-box Gene Family	AT1G23030	42.466	3.38e-13	72.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2754g00029	-		-	gmx:100820501	1542.32