Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2754g00028 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGAAGAAGAAGAGTGACAAGGTCTAGATTTTCCTTCCACAATGGTGCTTTGAGTGAGCCACTTTACTCTTTCGAAGAGAGACTTTGTGTATCAAGTGAAAGAATCAAAACACACAGAACAAAATCTGATGCCTCACAATCTCAGATTAGAAGTGGACCGCTACAAAGTGATACTCATACTGCTAAGAACCGGAGGCCAAGGGATAGCCTCTTCATAAGAGACAAAATGGATGAACGTTTGAAGAATGAAACTGAGAAGAAACGTTCAACCGATAAAAAATCAGAAGATAGCATAGTTGAAGATATTTATTCAGACCAAGTGTCTAATTCTAGAAGAGGCAAAGAAAAGAATTTCAATGAACTTGTGGGAAAGCAAGTCAAGGACCCAAAAATGAGTAAGATGCATAGCAGAAGTTCCAGTAATCATATGCTTGGACACTGGAGTGGGAATAGAAAGAGTATAAAATCCCAGGAGGACTCGTACACTAGATCTAATAGCAAAAACATTGAAGATGGCAGCAATAAAAATAGAGATCACGCTATGCAAATAGCTTCTAGTTTCGCTCTTGATGAAGTTGCTGTCCAAGCAATAGTTTCCATTCTAAATGGGTATATAAAACGATTTCTAAAAGATGAGGACTTTCGGTCTACATTGCGTCACAATTGTTTCTCCTCCTTGAATTTTGTTGAACTGGAAGAAGAGAACAATACTGAGACCAAAGTCATAAGAAGTCTCGAGCATGCAATTGAGACCGTAGAACAAACTGCTGAGGAGCCTATATCTACCACATATCTGAAGAGAGCCACCATGCAGCTAAGCATTATTACAGGTTTGAGTTTAAATGATTTGAAGTATGGGTTTACATGTGGTATCCCGAATTATAAGCTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTATATATGATACAGAGAAAAAAGGAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTCTGTGATTCACCTTTTCAGGCAAGGACAATATTGTTGCCTGAACTGTGGGAGCACCTATTTTCTCCACAACTTTCCCATTTGAAGGCATGGTGCAACAAGGAAGCTGAAATTCTAGTGGATGCAGCAAGCAAAACAGGAAAGCTGAAGCTTCTTCAAAAAGTGTATGATGAACATTTGGATTCCGGAACTCATACATTTGCCGTATACTACAAAGATTGGCTCGCTGAAGGAGTAGAATCTCCATCTATTCCTTCTATCGGCATTCCTTCAATATCTGTTACAGGAAGTCAACAGGTTAGTTCACATGGTCATTCTTCGGAGTCTGCTAGCTCCCCTGAACCATTCTCACCACAGCCACTGGTCAGCAAGAAACTATATGATTCTGTCTTTGGGAATTCGAGTAAACCTGGAGTTTATGAAGTCAAAGATAATGAGGATGAAGATAAACTAGAAAATTGCGTGAGAGGCTCTTATGGTTCAACTATTGTTGAACAAACAATAGTGTATGAGTCTGAAACTGTTAAATTTACGGATCAAGATGTTGAAGATTTCACTCAAAGTGTACTAGTCGGTGCATTCCATCCTCAGAAAGGAACTTCAATGATGGCTGTAGAAGAATGGCAAGAAACGAATCTCAGCAATGAAATTAATAACTCTTTCTCCATACAAACTAATTTAAACAGCGGCACAATTGATGCTCAACCACATGGAAAAGTAAATGAACTTGCTCTCAGAAGGGTAACTATGTCTCCAAATAAGATAAGCTCTGCAGTTGAAGGATCATTTTTTCCAAGCATTCCACAGGAATTTATTTGTCCTCTTAATGGAAATCTCTTTGAGGAACCAGTAACTCTAGAGACTGGTCAAACCTTTGAAAGAGAAGCCATCAAAGCATGGTTTGAAAAGGGAAACAGAACATGCCCGGTAACAGGAAATACCTTAGAATGTGTAGTGATGCCACTTACCAACCTTATTTTGAAGCGTTTGATCGATAATTGGAAGTCAGAACACTTTAGTCACCTTCTGGATTTTGCTTTTCAAACAGTGGGAAATTCAAAGGAACTTAAGTTGAAAAAGAGGGATGAGGCTACCGTTTTCAAGTTAAAGAGTCTTCTCTCATCTTTGCAAGAAGAGGACAAATCAACTTATGCTAAGCGTCTCATCTCTTTAGGAGTTCTTTCATTTCTGTTAAGGAGGTTTGAACTGGGAAATGTGGAAGAAAAATCACAAGTGTTGTCACTCTTGATAAACTGTATTCAAGCAGACTCAGATTGTATATTTCAGATAGCAAAGAGTATTGACAGAAAATGTCTTTGTCAGCTTCTTCACAGCAAGGAGGTTACCTCAATAACAAATGCAATAGTATTCCTTACTGAGCTTGTATCGATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTAGCTTGGCGGGTGAAGATGTATTTAATACAATGCATGTTCTGCTCATTTATCTCGCCAATTCTTCTCCGCATGAAAAGCCTCTAATTGCTGTCCTTTTGTTACACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGATGGCTGTGAATGCCATTGCAGTGGGACTTGATGCCAGCTTAAATGATGAGAAGGCCCGAGTAAAGTGTTGCAGAGCTCTTTTAATCTTGTGTGGGCATTTTTCTTCAACTGGAAAGACACAGACCATGAGTAGCATCTTAAAACAAGCAGGTTATAATAATGATAGCTCACAAGTGAAACCTCCTAGCCATGAAGAAGAAGGCCAGCATTCAGATGTAACCATTTCATTGGAAGATGAAGAAGAAAGGGGTGAAGAGTTGCAAATGAACTTGTTAGAATCATTGATTGGTAATGGAGAAAGCCCATTTTTGAAGACTATATCTAGTTGTTTAGATTCTAGACACCTAGATTTGGTGAGGGCGTGTCTAATAACTGTTACATGGTTGAGCTCCTCACTTTGTACACTATTTAATGCTGGAGTGCATCTTCCTGCCCTCTTAACCATCATCTCTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGTTCAAGACTCTTGCATCTATGTCCTTACTTAATTTCAGTAAAATATCAGAATGTAGAACTCTTCTGAAGACTATGGCAGAAGATATTGCTCCCCTTCTTCATGGACTTATTGATGTAACATGGCCTGCAAAGCAGCTGCATGCCATTGTGTCTGGGGAGAATCTGTAG 3249 0.3934 MASSLEELLAEEGFKGRRRVTRSRFSFHNGALSEPLYSFEERLCVSSERIKTHRTKSDASQSQIRSGPLQSDTHTAKNRRPRDSLFIRDKMDERLKNETEKKRSTDKKSEDSIVEDIYSDQVSNSRRGKEKNFNELVGKQVKDPKMSKMHSRSSSNHMLGHWSGNRKSIKSQEDSYTRSNSKNIEDGSNKNRDHAMQIASSFALDEVAVQAIVSILNGYIKRFLKDEDFRSTLRHNCFSSLNFVELEEENNTETKVIRSLEHAIETVEQTAEEPISTTYLKRATMQLSIITGLSLNDLKYGFTCGIPNYKLSACAHLYLSVVYMIQRKKEVSAKHLLQVFCDSPFQARTILLPELWEHLFSPQLSHLKAWCNKEAEILVDAASKTGKLKLLQKVYDEHLDSGTHTFAVYYKDWLAEGVESPSIPSIGIPSISVTGSQQVSSHGHSSESASSPEPFSPQPLVSKKLYDSVFGNSSKPGVYEVKDNEDEDKLENCVRGSYGSTIVEQTIVYESETVKFTDQDVEDFTQSVLVGAFHPQKGTSMMAVEEWQETNLSNEINNSFSIQTNLNSGTIDAQPHGKVNELALRRVTMSPNKISSAVEGSFFPSIPQEFICPLNGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLECVVMPLTNLILKRLIDNWKSEHFSHLLDFAFQTVGNSKELKLKKRDEATVFKLKSLLSSLQEEDKSTYAKRLISLGVLSFLLRRFELGNVEEKSQVLSLLINCIQADSDCIFQIAKSIDRKCLCQLLHSKEVTSITNAIVFLTELVSMKRRKDVTSFISSLAGEDVFNTMHVLLIYLANSSPHEKPLIAVLLLHFDLLVEPQKFSIYREMAVNAIAVGLDASLNDEKARVKCCRALLILCGHFSSTGKTQTMSSILKQAGYNNDSSQVKPPSHEEEGQHSDVTISLEDEEERGEELQMNLLESLIGNGESPFLKTISSCLDSRHLDLVRACLITVTWLSSSLCTLFNAGVHLPALLTIISQLKGILENGELEFKTLASMSLLNFSKISECRTLLKTMAEDIAPLLHGLIDVTWPAKQLHAIVSGENL 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2754g00028 1082 MobiDBLite consensus disorder prediction 59 74 - -
Gabi2754g00028 1082 SMART Ubox_2 609 673 IPR003613 GO:0004842|GO:0016567
Gabi2754g00028 1082 MobiDBLite consensus disorder prediction 49 191 - -
Gabi2754g00028 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 680 IPR013083 -
Gabi2754g00028 1082 CDD RING-Ubox_PUB 607 655 IPR045210 -
Gabi2754g00028 1082 MobiDBLite consensus disorder prediction 151 166 - -
Gabi2754g00028 1082 SUPERFAMILY RING/U-box 600 677 - -
Gabi2754g00028 1082 PANTHER OS04G0584500 PROTEIN 592 1080 - -
Gabi2754g00028 1082 ProSiteProfiles U-box domain profile. 605 680 IPR003613 GO:0004842|GO:0016567
Gabi2754g00028 1082 MobiDBLite consensus disorder prediction 75 115 - -
Gabi2754g00028 1082 SUPERFAMILY ARM repeat 666 1064 IPR016024 -
Gabi2754g00028 1082 MobiDBLite consensus disorder prediction 122 150 - -
Gabi2754g00028 1082 Pfam U-box domain 606 677 IPR003613 GO:0004842|GO:0016567
Gabi2754g00028 1082 MobiDBLite consensus disorder prediction 435 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2754g00028 Gabi-Chr2754 230834 240662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2754g00028 605 677 U-box Gene Family AT1G23030 42.466 3.42e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2754g00028 - - gmx:100803199 1524.22