Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2754g00020 ATGGGTTGCTTCTCGTGTTTCGATTCGACTTCAACACAGGATCACAACCTCAATTCTCAGCTGGATCAGGATCAGAATCAGAATCAGAATCAGGATCAGGATCAGGATCACCGTAACCGTAACCGTAACCGTAACCAGCACCAACCCAATCCAACCCTCCCTTCTCATATTTCCAGATTGCCCTCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGGGAACTGCCCCCTCTCAAGGATGGACCCGCTGTCCAAATTGCTGCTCAAACTTTTACTTTCCGTGAACTTGCAGCTGCAACAAAAAACTTTAGACCAGAGTCCTTTGTAGGGGAAGGTGGTTTTGGAAGGGTGTACAAAGGAAGGCTGGAAAGCACGGGTCAGATAGTTGCTGTTAAACAATTGGACAAAAATGGTCTTCAGGGTAATCGAGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTACATCATCCAAACCTTGTGAACCTCATTGGATACTGTGCGGATGGGGATCAACGCCTCCTCGTTTATGATTTTATGCCATTGGGATCATTGGAAGATCACCTTCACGATCTTCCCCCTGATAAGGAACCACTAGATTGGAACACTAGGATGAAAGTAGCTGCTGGTGCTGCTAAAGGATTAGAATACCTGCATGATGAGGCAAATCCTCCTGTCATTTATAGAGACTTCAAATCATCTAATATATTACTTGGTGAAGGATACCACCCAAAGCTTTCTGACTTTGGTCTTGCAAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGTGTGATGGGAACTTATGGTTATTGTGCTCCTGAGTATGCTATGACCGGACAACTGACTGCAAAGTCAGATGTATATAGTTTTGGGGTGGTCTTCTTAGAGCTGGTTACTGGCCGTAAAGCAATCGATAGCACCCAGCCCCATGGAGAACAAAACCTTGTCAAATGGGCACGTCCACTGTTTAATGACCGCAGGAAATTTTCAAAGTTGGCTGATCCAAGGCTGCAGGGGCGATTTCCCATGAGGGGTCTTTACCAGGCTCTAGCTGTGGCATCAATGTGCATTCAAGAATCAGCTGCTACACGTCCTATGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGTCAACCAGGCATATGACCCTAACAATGCTGGGAATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATAATGAAAAATGATGAAGCTGCAGGATCTGGACGCAGATGGGATTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCGAGGATGTTAAACAGAGATCTTGATAGAGAACGTGCCGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGAGAAAAAAGAAGACAAAGTGTGCAGCAGGGCAGTTTTGATGGTTCTAACGCTTAA 1434 0.4582 MGCFSCFDSTSTQDHNLNSQLDQDQNQNQNQDQDQDHRNRNRNRNQHQPNPTLPSHISRLPSGADKLRSRSNGGSKRELPPLKDGPAVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLESTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYDFMPLGSLEDHLHDLPPDKEPLDWNTRMKVAAGAAKGLEYLHDEANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTAKSDVYSFGVVFLELVTGRKAIDSTQPHGEQNLVKWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPMIGDVVTALSYLVNQAYDPNNAGNDKRNRDDKGGRIMKNDEAAGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLREKRRQSVQQGSFDGSNA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2754g00020 477 FunFam Serine/threonine-protein kinase PBS1 81 183 - -
Gabi2754g00020 477 Gene3D Phosphorylase Kinase; domain 1 76 183 - -
Gabi2754g00020 477 ProSiteProfiles Protein kinase domain profile. 107 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2754g00020 477 MobiDBLite consensus disorder prediction 395 442 - -
Gabi2754g00020 477 FunFam Serine/threonine-protein kinase PBS1 184 400 - -
Gabi2754g00020 477 CDD STKc_IRAK 113 381 - -
Gabi2754g00020 477 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Gabi2754g00020 477 Gene3D Transferase(Phosphotransferase) domain 1 184 406 - -
Gabi2754g00020 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Gabi2754g00020 477 SUPERFAMILY Protein kinase-like (PK-like) 92 379 IPR011009 -
Gabi2754g00020 477 MobiDBLite consensus disorder prediction 457 477 - -
Gabi2754g00020 477 Pfam Protein kinase domain 110 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2754g00020 477 MobiDBLite consensus disorder prediction 1 85 - -
Gabi2754g00020 477 MobiDBLite consensus disorder prediction 389 442 - -
Gabi2754g00020 477 PANTHER OS07G0668900 PROTEIN 3 396 - -
Gabi2754g00020 477 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2754g00020 Gabi-Chr2754 158799 164336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2754g00020 1 464 Glycoside Hydrolase AT3G07070 52.350 3.87e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi2754g00020 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2754g00020 K13430 - gmx:100305422 802.357