Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2754g00018 ATGGGTTGCTTCTCGTGTTTCGATTCGACTTCAACACAGGATCACAACCTCCGTAACCAGCACCAACCCAATCCAACCCTCCCTTCTCATATTTCCAGATTGCCCTCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGGGAACTGCCCCCTCTCAAGGATGGACCCGCTGTCCAAATTGCTGCTCAAACTTTTACTTTCCGTGAACTTGCAGCTGCAACAAAAAACTTTAGACCAGAGTCCTTTGTAGGGGAAGGTGGTTTTGGAAGGGTGTACAAAGGAAGGCTGGAAAGCACGGGTCAGATAGTTGCTGTTAAACAATTGGACAAAAATGGTCTTCAGGGTAATCGAGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTACATCATCCAAACCTTGTGAACCTCATTGGATACTGTGCGGATGGGGATCAACGCCTCCTCGTTTATGATTTTATGCCATTGGGATCATTGGAAGATCACCTTCACGATCTTCCCCCTGATAAGGAACCACTAGATTGGAACACTAGGATGAAAGTAGCTGCTGGTGCTGCTAAAGGATTAGAATACCTGCATGATGAGGCAAATCCTCCTGTCATTTATAGAGACTTCAAATCATCTAATATATTACTTGGTGAAGGATACCACCCAAAGCTTTCTGACTTTGGTCTTGCAAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGTGTGATGGGAACTTATGGTTATTGTGCTCCTGAGTATGCTATGACCGGACAACTGACTGCAAAGTCAGATGTATATAGTTTTGGGGTGGTCTTCTTAGAGCTGGTTACTGGCCGTAAAGCAATCGATAGCACCCAGCCCCATGGAGAACAAAACCTTGTCAAATGGGCACGTCCACTGTTTAATGACCGCAGGAAATTTTCAAAGTTGGCTGATCCAAGGCTGCAGGGGCGATTTCCCATGAGGGGTCTTTACCAGGCTCTAGCTGTGGCATCAATGTGCATTCAAGAATCAGCTGCTACACGTCCTATGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGTCAACCAGGCATATGACCCTAACAATGCTGGGAATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATAATGAAAAATGATGAAGCTGCAGGATCTGGACGCAGATGGGATTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCGAGGATGTTAAACAGAGATCTTGATAGAGAACGTGCCGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGAGAAAAAAGAAGACAAAGTGTGCAGCAGGGCAGTTTTGATGGTTCTAACGCTTAA 1356 0.4587 MGCFSCFDSTSTQDHNLRNQHQPNPTLPSHISRLPSGADKLRSRSNGGSKRELPPLKDGPAVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLESTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYDFMPLGSLEDHLHDLPPDKEPLDWNTRMKVAAGAAKGLEYLHDEANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTAKSDVYSFGVVFLELVTGRKAIDSTQPHGEQNLVKWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPMIGDVVTALSYLVNQAYDPNNAGNDKRNRDDKGGRIMKNDEAAGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLREKRRQSVQQGSFDGSNA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2754g00018 451 MobiDBLite consensus disorder prediction 369 416 - -
Gabi2754g00018 451 ProSiteProfiles Protein kinase domain profile. 81 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2754g00018 451 FunFam Serine/threonine-protein kinase PBS1 55 157 - -
Gabi2754g00018 451 PANTHER OS07G0668900 PROTEIN 3 370 - -
Gabi2754g00018 451 MobiDBLite consensus disorder prediction 1 31 - -
Gabi2754g00018 451 Gene3D Phosphorylase Kinase; domain 1 50 157 - -
Gabi2754g00018 451 MobiDBLite consensus disorder prediction 363 416 - -
Gabi2754g00018 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gabi2754g00018 451 SUPERFAMILY Protein kinase-like (PK-like) 66 353 IPR011009 -
Gabi2754g00018 451 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Gabi2754g00018 451 MobiDBLite consensus disorder prediction 1 57 - -
Gabi2754g00018 451 Gene3D Transferase(Phosphotransferase) domain 1 158 380 - -
Gabi2754g00018 451 MobiDBLite consensus disorder prediction 431 451 - -
Gabi2754g00018 451 Pfam Protein kinase domain 84 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2754g00018 451 FunFam Serine/threonine-protein kinase PBS1 158 374 - -
Gabi2754g00018 451 CDD STKc_IRAK 87 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2754g00018 Gabi-Chr2754 158799 164340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2754g00018 1 438 Glycoside Hydrolase AT3G07070 54.167 7.57e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi2754g00018 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2754g00018 K13430 - gmx:100305422 828.55