Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2753g00002 ATGTCCACCGTCGCAGCAGCGCAACCCAAGGCCAAGAAAACGGCGGCGTCAAAGAAGCCACCGTCGCATCCTCCCTTCGCCGAGATGATAACGGATGCGGTCGCGAGTTTGAAGGAGAGAACCGGTTCGAGCCAGTATGCGATCACCAAGTTCATCGAGGAGAAGCACAAGGACCTACCTCCTTCCTTCCGGAAGCTTATTCTTAACTACCTTAAGAAGTCGGTGGCCGCCGGCAAACTTATTAAGGTTAAGAACTCCTTCAAGCTGCCATCGACTAAACCGGCTCCGGCTAAGGCTACTACTACTGTTCCTGCTACCAAGAAGCCTAAAGCCGTGTCTAAGCCAAATGCCAAGCCCAAGCCCAAGCCCAAGGCTGCGGCGGTTAGTGTTAAGCCCAAAGCAAAGCCGACTAAGGTGACGGCGGCGAAGAAGAAGGTGGCTGCTAAGCCTGCAAGGAAGACACCGGTAAAGGCTGTGAAGAAACCTAAGAGCGTGAAATCGCCGGCGAAGAAGGCTAAGAAGGATAAGAAGTGA 534 0.5356 MSTVAAAQPKAKKTAASKKPPSHPPFAEMITDAVASLKERTGSSQYAITKFIEEKHKDLPPSFRKLILNYLKKSVAAGKLIKVKNSFKLPSTKPAPAKATTTVPATKKPKAVSKPNAKPKPKPKAAAVSVKPKAKPTKVTAAKKKVAAKPARKTPVKAVKKPKSVKSPAKKAKKDKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2753g00002 177 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2753g00002 177 PANTHER HISTONE H1 7 173 - -
Gabi2753g00002 177 Pfam linker histone H1 and H5 family 23 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi2753g00002 177 SMART h15plus2 20 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi2753g00002 177 SUPERFAMILY "Winged helix" DNA-binding domain 19 100 IPR036390 -
Gabi2753g00002 177 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 22 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi2753g00002 177 MobiDBLite consensus disorder prediction 137 177 - -
Gabi2753g00002 177 CDD H15 20 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi2753g00002 177 Gene3D - 17 102 IPR036388 -
Gabi2753g00002 177 PRINTS Histone H5 signature 9 30 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi2753g00002 177 PRINTS Histone H5 signature 145 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi2753g00002 177 PRINTS Histone H5 signature 110 124 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi2753g00002 177 PRINTS Histone H5 signature 167 177 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi2753g00002 177 PRINTS Histone H5 signature 36 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi2753g00002 177 Coils Coil 170 177 - -
Gabi2753g00002 177 MobiDBLite consensus disorder prediction 85 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2753g00002 Gabi-Chr2753 18184 19010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2753g00002 15 94 Single Myb Histone (SMH) Gene Family AT1G49950 34.146 9.85e-09 51.6