Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2748g00003 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGACAACCTGCAAACACAAAGATATCAAGCAACAAAACTGTTAGGAGGATTAGGGTTCGAGGTGGGAATGTGAAGTGGCGTGCATTGAGGCTTGACACTGGGAATTACTCTTGGGGGAGTGAAGCTGTGACTCGAAAGACAAGAATTCTTGATGTGGTGTATAATGCATCCAATAATGAGCTTGTTCGTACTCAGACATTGGTCAGGAGTGCTATTGTTCAGGTTGATGCTGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGTCTTGACATTGGTCGCAAGAAGAAGAGTACAATAACCTCTGCGAAGAAGGAAGGGGAGGTACTAGAAGATGTTGAAACTGCAACTGAGGATGCGAAGAAGAGTAACCATGTCTTGAGAAAATTGGAAAAGCGTAAACAGAACCGGGTGCTTGATCCTCACATTGAAGAACAATTCAGTGGTGGTCGCCTTATGGCTTGTATCTCGTCCCGACCTGGTCAATGTGGTCGTGCTGATGGATATTTATTAGAGGGCAAAGAGCTGGAATTCTACATGAAGAAGATTCAAAGGAAGAAAGGCAAGGCTGGTGGTGCTGCTTAA 675 0.4548 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVRSAIVQVDAAPFKQWYLQHYGLDIGRKKKSTITSAKKEGEVLEDVETATEDAKKSNHVLRKLEKRKQNRVLDPHIEEQFSGGRLMACISSRPGQCGRADGYLLEGKELEFYMKKIQRKKGKAGGAA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2748g00003 224 Gene3D - 28 217 - -
Gabi2748g00003 224 FunFam 40S ribosomal protein S8 109 180 - -
Gabi2748g00003 224 Coils Coil 143 163 - -
Gabi2748g00003 224 CDD Ribosomal_S8e_like 5 201 - -
Gabi2748g00003 224 Gene3D Ribosomal protein S8e, subdomain 109 180 IPR042563 -
Gabi2748g00003 224 Pfam Ribosomal protein S8e 5 201 IPR022309 -
Gabi2748g00003 224 MobiDBLite consensus disorder prediction 11 26 - -
Gabi2748g00003 224 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Gabi2748g00003 224 FunFam 40S ribosomal protein S8 32 165 - -
Gabi2748g00003 224 NCBIfam ribosomal protein eS8 1 203 IPR001047 GO:0003735|GO:0005840|GO:0006412
Gabi2748g00003 224 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 IPR001047 GO:0003735|GO:0005840|GO:0006412
Gabi2748g00003 224 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2748g00003 Gabi-Chr2748 14156 17040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2748g00003 1 224 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 80.357 1.89e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2748g00003 K02995 - gmx:100527325 395.201