Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2748g00002 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGACAACCTGCAAACACAAAGATATCAAGCAACAAAACTGTTAGGAGGATTAGGGTTCGAGGTGGGAATGTGAAGTGGCGTGCATTGAGGCTTGACACTGGGAATTACTCTTGGGGGAGTGAAGCTGTGACTCGAAAGACAAGAATTCTTGATGTGGTGTATAATGCATCCAATAATGAGCTTGTTCGTACTCAGACATTGGTCAGGAGTGCTATTGTTCAGGTTGATGCTGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGTCTTGACATTGGTCGCAAGAAGAAGAGTACAATAACCTCTGCGAAGAAGGAAGGGGAGGATGTTGAAACTGCAACTGAGGATGCGAAGAAGAGTAACCATGTCTTGAGAAAATTGGAAAAGCGTAAACAGAACCGGGTGCTTGATCCTCACATTGAAGAACAATTCAGTGGTGGTCGCCTTATGGCTTGTATCTCGTCCCGACCTGGTCAATGTGGTCGTGCTGATGGATATTTATTAGAGGGCAAAGAGCTGGAATTCTACATGAAGAAGATTCAAAGGAAGAAAGGCAAGGCTGGTGGTGCTGCTTAA 666 0.4565 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVRSAIVQVDAAPFKQWYLQHYGLDIGRKKKSTITSAKKEGEDVETATEDAKKSNHVLRKLEKRKQNRVLDPHIEEQFSGGRLMACISSRPGQCGRADGYLLEGKELEFYMKKIQRKKGKAGGAA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2748g00002 221 Gene3D - 164 216 - -
Gabi2748g00002 221 Gene3D - 32 163 - -
Gabi2748g00002 221 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 IPR001047 GO:0003735|GO:0005840|GO:0006412
Gabi2748g00002 221 MobiDBLite consensus disorder prediction 11 26 - -
Gabi2748g00002 221 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Gabi2748g00002 221 MobiDBLite consensus disorder prediction 1 39 - -
Gabi2748g00002 221 Coils Coil 140 160 - -
Gabi2748g00002 221 Pfam Ribosomal protein S8e 5 198 IPR022309 -
Gabi2748g00002 221 CDD Ribosomal_S8e_like 5 198 - -
Gabi2748g00002 221 NCBIfam ribosomal protein eS8 1 200 IPR001047 GO:0003735|GO:0005840|GO:0006412
Gabi2748g00002 221 FunFam 40S ribosomal protein S8 32 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2748g00002 Gabi-Chr2748 14156 17040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2748g00002 1 221 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 81.900 3.28e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2748g00002 K02995 - gmx:100527325 400.593