Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2742g00006 ATGTCCATGGAAGAGTCTCTAAGATCTCTATCCCTGGATTACCTGAACCTACTCATCAACGGTCAAGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGTAGGTTGGTCCACGCGCACAGGTGCATCCTGGCGGCCCGAAGCCTCTTCTTTAGGAAATTCTTCTGCGGGCCTGACCCGCCGCCATCAGGGCTCGACCCAGCTGGGCCTCGGGTCAACAACAACAACAACAACAACAACAGGTCAGGGGTTATACAAGTGAACTCGGTGGGCTATGAGGTGTTCTTGTTGATGCTGCAGTTTCTCTACAGTGGTCAAGTCTCTATTGTTCCTCAGAAGCACGAACCAAGGCCTAATTGTGGTGAACGAGGTTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGATACCCTCGCTGCCGCTAGATATTTTGCTGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCGAGCATGGTAGAGAAAGCCTCAATTGAAGATGTAATGAAAGTGCTAGTAGCATCAAGAAAGCAAGACATGCAACAACTATGGACCACTTGTTCCCACCTTGTAGCCAAGTCTGGTCTACCCCCTGAGGTTCTAGCCAAGCACCTTCCCATTGACATTGTCGCTAAGATTGAAGAGCTTCGTCTCAAATCCTCATTCTCACGCCGTTCCTTAATGCCACACCACGCTCACCACCACCATCATCAACAACACCACCATCATCAACATCAACATCACCCTCACCACCATGTTGATCTCGGCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGAGGGCCTTAGACTCATCCGATGTGGAACTAGTGAAGCTCATGGTAATGGGTGAAGGACTAAACCTCGATGAAGCATTAGCCTTACCCTATGCCGTTGAGAATTGCAGCAGAGAAGTTGTAAAAGCCTTGCTTGAACTCGGTGCAGCTGATGTTAACTACCCAGCCGGACCCGCCGGTAAAACGCCGCTACACATAGCGGCGGAAATGGTGTCGCCGGACATGGTGGCGGTGCTGCTCGACCACCATGCCGACCCGAATGTACGAACCATAGATGGTGTGACACCATTGGACATACTAAGAACCCTAACCTCTGATTTCCTCTTCAAAGGTGCTGTCCCTGGATTAACTCACATCGAACCAAACAAGCTTAGGTTGTGCTTGGAGCTTGTTCAATCTGCGGCACTCGTGCTTTCAAGAGAAGAAGGAAATGCAAACAACAACAACAACACTCCTTCTTCTACAACAACAGCTATATACCCTCCCATGAACGAAGACCATAATAACAGGTTGGTGTATCTCAACCTTGGTGCGACTCAAATGAGTTCTAGGTTGGACGGTGGTGATGATGATAGCAGCCACAGGGAAGCCATGAACCCAACAACCATGTTTCATCACTCTCATGACTTCTAA 1440 0.4986 MSMEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPPSGLDPAGPRVNNNNNNNNRSGVIQVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFAVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMQQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSFSRRSLMPHHAHHHHHQQHHHHQHQHHPHHHVDLGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTIDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANNNNNTPSSTTTAIYPPMNEDHNNRLVYLNLGATQMSSRLDGGDDDSSHREAMNPTTMFHHSHDF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2742g00006 479 Gene3D Potassium Channel Kv1.1; Chain A 2 196 IPR011333 -
Gabi2742g00006 479 Pfam Ankyrin repeats (3 copies) 276 358 IPR002110 GO:0005515
Gabi2742g00006 479 SUPERFAMILY POZ domain 9 191 IPR011333 -
Gabi2742g00006 479 Pfam BTB/POZ domain 16 113 IPR000210 GO:0005515
Gabi2742g00006 479 CDD BTB_POZ_NPR_plant 8 163 - -
Gabi2742g00006 479 MobiDBLite consensus disorder prediction 230 252 - -
Gabi2742g00006 479 MobiDBLite consensus disorder prediction 451 479 - -
Gabi2742g00006 479 MobiDBLite consensus disorder prediction 230 257 - -
Gabi2742g00006 479 ProSiteProfiles BTB domain profile. 25 110 IPR000210 GO:0005515
Gabi2742g00006 479 FunFam regulatory protein NPR5 isoform X2 259 376 - -
Gabi2742g00006 479 ProSiteProfiles Ankyrin repeat region circular profile. 328 358 - -
Gabi2742g00006 479 ProSiteProfiles Ankyrin repeat profile. 328 360 IPR002110 GO:0005515
Gabi2742g00006 479 SUPERFAMILY Ankyrin repeat 286 371 IPR036770 -
Gabi2742g00006 479 MobiDBLite consensus disorder prediction 456 479 - -
Gabi2742g00006 479 Gene3D - 260 376 IPR036770 -
Gabi2742g00006 479 SMART ANK_2a 293 323 IPR002110 GO:0005515
Gabi2742g00006 479 SMART ANK_2a 328 357 IPR002110 GO:0005515
Gabi2742g00006 479 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 473 IPR044284 GO:0099402
Gabi2742g00006 479 FunFam regulatory protein NPR5 isoform X1 4 196 - -
Gabi2742g00006 479 Pfam Domain of unknown function (DUF3420) 198 270 IPR024228 -
Gabi2742g00006 479 SMART BTB_4 25 163 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2742g00006 Gabi-Chr2742 136945 139939 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi2742g00006 BTB 2.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2742g00006 K14508 - zju:107433767 723.776