Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2740g00054 ATGCCGGTGCTGCGTAGCGGAGTACGCAGGGGCCGGGCAGCAGCGAAGCAACAACAGCAGAGTCCGGTGGAAGGGGAAGCGATTGCAACGAGAACGAGGAGGCGGCGTGCGGCGGCTGCGGCGGCGGCTACAGTGCCGAAGAATAACAAGCAACAACAACAGCAGCAGGCTGTGGTCAATGAGAACGTAGTTGTTGTTCCGGAGAAGGAAGAAGAGAATCGGGAACTGGACGAAGCTGTTCGTGACGGTGGAGACGTAGGTGGTGGTGGTGTTGGTGGAGGGGAGAAGGAAGAAGTAGGGGAGAAACAGATGGATGAATTTGATAGTGGAGCTCGCAGCAATGATAAGGCCAATGCTGGTGAAGATGAGGGTAGCACTGCTCCACTTCCCGAGAAGGTTCAAGTAGGCGGCTCCCCTTGGTATAAATTAGAAAGAAAACTTGGCAAGGGTGGATTTGGTCAAGTATATGTAGGTCGGCGTGCTTCTGGTGTAAATTTGAGTGAAAGAACTGGACCTGGAGCTGTAGAGGTTGCATTAAAATTTGAGCATCGAAGTAGTAAAGGATGTAACTATGGACCACCCTATGAGTGGCAAGTGTACAACACTCTTGGTGGTAGTCATGGTGTGCCTCAGGTACATTACAAGGGAAGGCAAGGTGACTATTATGTCATGGTTATGGATATGCTAGGACCTAGCTTGTGGGATGTTTGGAATAATAACTCTCACACCATGTCCACTGAAATGGTTGCTTGTATTGCCATTGAAGCAGTATCCATATTGGAGAAGATGCACTCTCGAGGATATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTCCTCCTGGGACACCTGATGAGAAAAAACTGTTCCTTGTAGATCTTGGATTAGCTACTAAATGGCGAGATGGGGCAACAGGTTTGCACGTGGAATATGACCAAAGGCCAGATGTTTTCAGGGGCACAGTCCGCTATGCTAGTGTTCATGCACATTTGGGGAGAACTGGAAGCAGGAGGGATGATTTGGAATCTCTTGCCTATACGCTGGTTTTTCTTCTAAAAGGCCGTCTTCCTTGGCAGGGGTTCCAGGTTGGTCAGGGAGAGAACAAGGGATTTCTTGTTTGCAAGAAGAAGATGGGAACAGCTCCAGAGAGCCTATGTTGCTTTTGTCCCCAACCTTTTAGACAGTTTGTTGAACATGTAGTGAACTTAAAGTTTGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCAAATCCAGATATTAGGCCAATTAATACAGAAGGTGCACAAAAGCTCATTGGTCATAAGAGAGGCCGGTTGGCAATGGGAGAGGAAGACGATGAACAACCCAAAAAGAAGATTCGCATGGGTGTGCCGGCAACCCAGTGGATAAGTGTTTACAATGCTCGTAGACCGATGAAACAAAGATATCACTACAATGTAGCAGATTCAAGGCTAGCCCAGCATATTGAGAAAGGAAATGAGGATGGCTTATTTATTAGCAGTGTTACCTCATGTCAGAACCTATGGGCCATAATCATGGATGCAGGGACAGGTTTCACTGCCCAAGTTTATGAACTCTCCCCCCACTTTCTCAGTAAGGAATGGATCATGGAGCAATGGGAAAAAAGTTACTATATCAGCGCAATTGCTGGGGCTATAAATGGGAGCTCACTAGTAGTAATGTCTAAGGGCACTCAGTATTTGCAGCAATCGTACAAAGTTAGCGATTCATTTCCTTTCAAGTGGATTAACAAAAAATGGAGGGAGGGCTTTTACGTGACTGCAATGGCGACCTCAGGGTCCAGATGGGGAGTAGTTATGTCTCGTGGTGCTGGATTTTCTGATCAGGTGGTTGAACTAGATTTTCTGTATCCTAGTGAAGGGATTCACAAGCGTTGGGATTGTGGGTACCGAATCACAGCAACTGCTGCAACTTGGGACCAAGCTGCTTTTGTCCTGAGTATGCCAAGGAGGAGACCCACAGATGAAACTCAAGAAACACTTAGGACTTCTGCATTTCCTAGCACTCATGTCAAGGATAAGTGGGCAAAGAACCTCTACATTGCTTCTGTTTGCTATGGACGTACAGTTTCTTGA 2127 0.4678 MPVLRSGVRRGRAAAKQQQQSPVEGEAIATRTRRRRAAAAAAATVPKNNKQQQQQQAVVNENVVVVPEKEEENRELDEAVRDGGDVGGGGVGGGEKEEVGEKQMDEFDSGARSNDKANAGEDEGSTAPLPEKVQVGGSPWYKLERKLGKGGFGQVYVGRRASGVNLSERTGPGAVEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAVSILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATKWRDGATGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLKGRLPWQGFQVGQGENKGFLVCKKKMGTAPESLCCFCPQPFRQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMGEEDDEQPKKKIRMGVPATQWISVYNARRPMKQRYHYNVADSRLAQHIEKGNEDGLFISSVTSCQNLWAIIMDAGTGFTAQVYELSPHFLSKEWIMEQWEKSYYISAIAGAINGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATSGSRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDCGYRITATAATWDQAAFVLSMPRRRPTDETQETLRTSAFPSTHVKDKWAKNLYIASVCYGRTVS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2740g00054 708 MobiDBLite consensus disorder prediction 1 133 - -
Gabi2740g00054 708 SUPERFAMILY Protein kinase-like (PK-like) 141 424 IPR011009 -
Gabi2740g00054 708 MobiDBLite consensus disorder prediction 45 61 - -
Gabi2740g00054 708 PANTHER CASEIN KINASE-RELATED 135 678 - -
Gabi2740g00054 708 MobiDBLite consensus disorder prediction 95 119 - -
Gabi2740g00054 708 CDD STKc_CK1 141 420 - -
Gabi2740g00054 708 FunFam casein kinase 1-like protein HD16 114 464 - -
Gabi2740g00054 708 Gene3D Transferase(Phosphotransferase) domain 1 106 462 - -
Gabi2740g00054 708 ProSitePatterns Protein kinases ATP-binding region signature. 147 180 IPR017441 GO:0005524
Gabi2740g00054 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Gabi2740g00054 708 ProSiteProfiles Protein kinase domain profile. 141 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2740g00054 708 Pfam Protein kinase domain 141 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2740g00054 708 SMART serkin_6 141 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2740g00054 708 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2740g00054 Gabi-Chr2740 334745 340859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2740g00054 141 305 EF-hand Containing Proteins AT4G35310 29.341 1.08e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi2740g00054 Pkinase 3.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2740g00054 - - zju:107435330 1188.33