Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2740g00049 ATGTCCTGCAAGGATGGTAGCAAACACTTAATGGATAACGGCAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTATCATGATTGTCCTAAACCAAGTTCAATTCGCCGCCAGCAACTCATACGCGAGTGCCCAATTCTCTCCCACATTGAGCCAAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAGAGAAAAGAGGCTTCGCGGCTGCAAGGTGTGAATCGGAAGTTGACTGCAATGAATAAGCTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAAAATGGTTATTTTCGTCAACACAACCAGAATACTACTCTTGCAACCAAAGACACAAGCTGTGAATCAGCTGTGACGAGTGGTCAGCACAGTTTGACAACTCAAAATCCTCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTAGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGGTTGCAGAAATCCTCAAAGATCGGCCTTTGTGGTTTCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCGCCAACAACATTGGCACCTGCTCGAGACTTCTGGTTGTTGCGTTACACTACTGTTTTAGAAGATGGCAGCTTAGTGATCTGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCTAGTGGGTATCTAATTAGACCTTGTGATGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTGCCTGAAGTGCTGCGTCCACTGTATGAATCATCAACGGTGCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCAGCTAAGGCAGATTTCGCATGAAGTTTCTCAGTCTAACGTCACTGGGTGGGGTAGACGACCAGCAGCTCTACGAGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTAAATGGGTTTACTGATGAAGGATGGTCCATGATCGGCAATGACGGCATAGATGATGTTACTATTCTAGTGAATTCGTCCCCTGACAAGTTAATGGGTCTGAATCTTTCATTTGCCAATGGATTTCCTTCTGTTAGTAATGCAGTGTTATGTGCCAAAGCATCAATGCTATTGCAGAATGTGCCTCCAGCCATTCTCCTAAGATTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGCCCTTGTAGCTTATCAGGATCTCGTGTTGGAAATTATGGGGGTCAAGTTATACTCCCTCTAGCACACACTATTGAGCATGAGGAGTTTTTGGAAGTCATTAAGTTGGAAGGAATTGCTCATTCTCCTGATGACCCAATAATGCCAAGAGAAGTGTTTCTTTTGCAATTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCCGAACTTATATTTGCTCCAATTGATGCTTCCTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCCCTTGAATCTGGAAAGGTTAGCCTCATGTTGTTAAAACGCCCTAATCGCACCCTTGACCTTGCATCTGCCCTTGACATTGGTCCCACTGGAAACCGAACTTCAAATGATTATTCTGGAAATCACGGTTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGAGCATGTAGCATCTATGGCACGGCAATATGTTCGAAGCATTATCTCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCCCATTTGGGTTCACATGCTGGGCTCAGGACACCATTAGGAACTCCAGAAGCACAAACCCTTGCTCAGTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAATGAGGGGAACGAATCTTTACTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGTAATCTAAAGGCATTGCCAGTGTTCACTTTCTCAAATCAGGCAGGGCTTGACATGCTGGAGACTACCCTAGTTGCATTACAAGATATAGCTTTGGAGAAAATATTTGATGATCACGGACGGAAGATTCTCTTTTCTGAGTTTCCCCAGATTATTCAACAGGGTTTTGCGTGTCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGCCCTATCTCATATGATAGAGTTGTTGCTTGGAAGGTGTTGAATGAAGAAGAGAATGCTCACTGTATTGGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2523 0.4526 MSCKDGSKHLMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHNQNTTLATKDTSCESAVTSGQHSLTTQNPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPLWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTTVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMIGNDGIDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPDDPIMPREVFLLQFCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLESGKVSLMLLKRPNRTLDLASALDIGPTGNRTSNDYSGNHGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLGSHAGLRTPLGTPEAQTLAQWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCNLKALPVFTFSNQAGLDMLETTLVALQDIALEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPISYDRVVAWKVLNEEENAHCIGFMFMNWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2740g00049 840 MobiDBLite consensus disorder prediction 131 153 - -
Gabi2740g00049 840 CDD homeodomain 15 75 IPR001356 GO:0003677
Gabi2740g00049 840 ProSiteProfiles 'Homeobox' domain profile. 10 74 IPR001356 GO:0003677
Gabi2740g00049 840 Coils Coil 84 111 - -
Gabi2740g00049 840 Gene3D - 193 375 IPR023393 -
Gabi2740g00049 840 CDD bZIP 67 106 - -
Gabi2740g00049 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 11 840 IPR044830 GO:0003700
Gabi2740g00049 840 SMART START_1 158 368 IPR002913 GO:0008289
Gabi2740g00049 840 MobiDBLite consensus disorder prediction 131 151 - -
Gabi2740g00049 840 CDD START_ArGLABRA2_like 153 368 - -
Gabi2740g00049 840 Gene3D - 7 80 - -
Gabi2740g00049 840 Pfam MEKHLA domain 697 839 IPR013978 -
Gabi2740g00049 840 SUPERFAMILY Bet v1-like 158 367 - -
Gabi2740g00049 840 SUPERFAMILY Homeodomain-like 14 77 IPR009057 -
Gabi2740g00049 840 FunFam Homeobox-leucine zipper protein REVOLUTA 15 70 - -
Gabi2740g00049 840 FunFam homeobox-leucine zipper protein ATHB-15 194 375 - -
Gabi2740g00049 840 Pfam START domain 159 367 IPR002913 GO:0008289
Gabi2740g00049 840 SMART HOX_1 12 78 IPR001356 GO:0003677
Gabi2740g00049 840 Pfam Homeodomain 15 73 IPR001356 GO:0003677
Gabi2740g00049 840 ProSiteProfiles START domain profile. 149 364 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2740g00049 Gabi-Chr2740 290609 298680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2740g00049 1 792 Homeobox Transcription Factor Family AT1G52150 84.887 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2740g00049 START 2.5e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2740g00049 K09338 - gmx:100800165 1579.69