Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2740g00048 ATGGAAGCGCCGGAATACTACGTCGGTGGCTATTTTGGCGCCGGAGGAGCGGACCAATTCTCGGCTCCGGAGAAGCGGCACGGCGACCAGAAGCCCGGCGAGCCTTTCGCTATCGACGACCTCCTCGACTTCTCCAATGCCGACGTTATTATGTCCGACGGTTTCTTCGAAAATGTCGCCGGAAACTCCACCGACTCTTCCACCGTCACCGCCGTCGACAGCTGCAACTCCTCAATTTCCAACATTGTTCCTCGCGGCGGCTTCACCGGCGATCCTCAATTCTCCGGAGAACTCTGTGTTCCGTATGATGACATGGCGGAACTGGAATGGCTCTCGAACTTCGTGGAAGACTCGTTCTCCGCCGAAGAGGAGCTGAAAACACTCCAGCTTCTCTCCGGCGCCGCCGCGAATGGCGGTGGACAGCAGACACTGGAGTCGTCCTCTTCCACCGACACGCTCCCGCCGTTCGCTGCGGACGACTCCGCTCGAAACGCGCCGTTTCTCCGTCAGGAAACCCCGCTCCCGGGGAAGGCGAGGAGCAAGCGTTCACGCGCCGCGCCGGGAGACTGGTCCACGCGCCTCCTTCACCTCGTGGCTCCCGCCGACGGTACGGCGCAACCGAAGGCGGCGCCGGCGAAGAAGAGGGAGGGTTTGAATGCGGAGTGCTCGGGGCGGAAATGCTTGCACTGTGGAGCGGAGAAGACGCCGCAATGGCGAACGGGACCGATGGGACCGAAGACGCTGTGCAATGCGTGCGGCGTGAGGTTCAAGTCAGGGAGGTTGGTGGCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGTCGACGAAGCATTCGAATTCGCATAGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGAGATGCAACGACAGCAGCATCAGCAACTTCTCAATCAGACTTCAATTTTCGGCGTATCCAACGGTGGAGATGAGTTCTTGATTCATCATCATCATCATCATCACCATTGTGGTTCTGATTTTAGGCACGTTATCTAG 1014 0.5947 MEAPEYYVGGYFGAGGADQFSAPEKRHGDQKPGEPFAIDDLLDFSNADVIMSDGFFENVAGNSTDSSTVTAVDSCNSSISNIVPRGGFTGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGAAANGGGQQTLESSSSTDTLPPFAADDSARNAPFLRQETPLPGKARSKRSRAAPGDWSTRLLHLVAPADGTAQPKAAPAKKREGLNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVAEYRPAASPTFVSTKHSNSHRKVLELRRQKEMQRQQHQQLLNQTSIFGVSNGGDEFLIHHHHHHHHCGSDFRHVI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2740g00048 337 PIRSF Txn_fac_GATA_plant 20 314 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi2740g00048 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 224 284 - -
Gabi2740g00048 337 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Gabi2740g00048 337 CDD ZnF_GATA 226 273 IPR000679 GO:0006355|GO:0043565
Gabi2740g00048 337 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Gabi2740g00048 337 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
Gabi2740g00048 337 FunFam GATA transcription factor 217 302 - -
Gabi2740g00048 337 PANTHER GATA TRANSCRIPTION FACTOR 26 303 - -
Gabi2740g00048 337 MobiDBLite consensus disorder prediction 136 155 - -
Gabi2740g00048 337 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
Gabi2740g00048 337 MobiDBLite consensus disorder prediction 136 189 - -
Gabi2740g00048 337 Coils Coil 285 305 - -
Gabi2740g00048 337 Gene3D - 222 305 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2740g00048 Gabi-Chr2740 278820 279951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2740g00048 34 337 C2C2-Gata Transcription Factor Family AT4G32890 46.835 3.92e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2740g00048 GATA 4.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2740g00048 - - gmx:100776605 535.028