Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2737g00030 ATGAAGTGCTTGCGCTCAGGGGAGCCATTAGGAGGAGCAGATGAAATGTTTCCTTCATCTGAATCTCTTGCAACCAAGAATTTTTCAGCAAGTGGACATTCTTGCCTTGACAAGAAGCTGGACACTGGCAATATAGAAGAAGCTGAATCATCCTTGCGTGAGAGTGGTGTCCTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATTTTGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAAGTATTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCAATAAGAAACATTCCCATAATCATGCTGAACCGCAAATGTCTATACATGCTATCGGCTTACTATTGGAAGCAGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGAAAGGTTTAAAGAAGCTGCCCAATGTTGTAAAGTTATTCTGGACATAGTAGAGTCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTGAGCAAGGCAGTTGAGCTGCTACCAGAATTATGGAAACTTGCTGATTGTCCACGTCAAGCTATTTTGTCTTACCGACGAGCACTCCTTCATCAATGGAATCTTGACGTAGAGAATACAACAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTACATAGTGGAGGAGAAGCAGCACCCCCTAATCTCCGTTCTCAAATGGATGGCTCATTTGTACCTAGAAACAATATAGAAGAGGCTATACTTCTTTTAATGATTTTGTTAAGAAAAGTCTCTCTAAATAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTATTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTCCCCGGGACTATCCCTCGGAGAGAAAGTTACCATTCTCTAGCTCTTTGTTATTATGGAGCAGGTAGGGACTTGGTAGCACTGGATCTTCTCAGAAAATTGCTGAGTAGTAGAGAGGACCCAAAACATGTTCCAGGTTTGTTAATGGCTTCTAAGTTATGTTCTGTGAACTCTAGTCTTGCAGAAGAAGGGGTAAGCTTTTCTCGCAGAGTGATTGAGAACTTGGATGGCAGATGTAATCAGTTAGAAAATGTTGCCAATTTCTTTCTTGGTGTTTCGCTTTCAGCACACTCAAAATTGGCCGTTTCTGATTCTGAGAGGTTTAAGAGACAATATGAAGCACTTCATGCCCTGGAAACTGCTAGCAGAATGACAAGAATGAGAGACCCCCTTGTACTATACCATCTCAGTTTAGAATATGCAGAGCAAAGGAAGTTGGATACTGCACTTTATTATACAAAGTGCTTTTTAAAACTGGAAGGTGGTTCTAATGTTAAAGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCACTTAAGGAATGCCATTGAGACGTATACTCAGCTTCTTGCTGTTCTTCAAATTCTGAGTAAAAGTTTTGGTTCCGGGAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCACGATCTTGCTAATATATACATCAGTCTTTTACAGTGGCATGATGCGGAGGTGTGTCTTTCAAAATCTAAGGCCATCAAACCATACTCTGCTTCTAGATGTCATGCATTAGGTAGAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTCCGTGATGCTTTGGACATTGATCCTGGCCATGTCCTCAGCTTAATCTCCACCGCCGTAGTTCTTAGACGATGCAGTGATCAATCAAATCCTGCAGTAAGAATCTTTCTGATGGATGCAATACGGCATGATAGATTGAGTGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGTGTCATCATTAGTAGAAGCTACAGAATGTTTTCAGGCAGCACACTTTCTTGAAGAATCTGAACCGGTTGAAACTTTTAGATGA 2049 0.4085 MKCLRSGEPLGGADEMFPSSESLATKNFSASGHSCLDKKLDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNFVAALHVFEGIDISIVTPKIKIALSRSRERNKKHSHNHAEPQMSIHAIGLLLEAVFLKAKSLQVLERFKEAAQCCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCPRQAILSYRRALLHQWNLDVENTTKIQKEFVVFLLHSGGEAAPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSISGDLTALANQLEELLPGTIPRRESYHSLALCYYGAGRDLVALDLLRKLLSSREDPKHVPGLLMASKLCSVNSSLAEEGVSFSRRVIENLDGRCNQLENVANFFLGVSLSAHSKLAVSDSERFKRQYEALHALETASRMTRMRDPLVLYHLSLEYAEQRKLDTALYYTKCFLKLEGGSNVKDQTGKWDQGDLLRTKAKLQIAQGHLRNAIETYTQLLAVLQILSKSFGSGKKLYKDNRDRARNLEVEIWHDLANIYISLLQWHDAEVCLSKSKAIKPYSASRCHALGRMYEAKGLYKEALKAFRDALDIDPGHVLSLISTAVVLRRCSDQSNPAVRIFLMDAIRHDRLSASAWYNLGLLHKAEGTVSSLVEATECFQAAHFLEESEPVETFR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2737g00030 682 SUPERFAMILY TPR-like 310 508 IPR011990 GO:0005515
Gabi2737g00030 682 ProSiteProfiles TPR repeat profile. 570 603 IPR019734 GO:0005515
Gabi2737g00030 682 Pfam Tetratricopeptide repeat 573 603 IPR013105 -
Gabi2737g00030 682 SUPERFAMILY TPR-like 481 654 IPR011990 GO:0005515
Gabi2737g00030 682 Gene3D Tetratricopeptide repeat domain 401 678 IPR011990 GO:0005515
Gabi2737g00030 682 Gene3D Tetratricopeptide repeat domain 35 392 IPR011990 GO:0005515
Gabi2737g00030 682 PANTHER PROTEIN NPG1 1 471 IPR043376 -
Gabi2737g00030 682 SMART tpr_5 128 161 IPR019734 GO:0005515
Gabi2737g00030 682 SMART tpr_5 570 603 IPR019734 GO:0005515
Gabi2737g00030 682 SMART tpr_5 536 569 IPR019734 GO:0005515
Gabi2737g00030 682 SMART tpr_5 435 468 IPR019734 GO:0005515
Gabi2737g00030 682 SMART tpr_5 640 676 IPR019734 GO:0005515
Gabi2737g00030 682 SMART tpr_5 313 346 IPR019734 GO:0005515
Gabi2737g00030 682 SMART tpr_5 480 513 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2737g00030 Gabi-Chr2737 268252 275570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2737g00030 1 682 Calmodulin-binding Proteins AT4G28600 56.630 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2737g00030 K21843 - gmx:100800762 1118.99