Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2737g00029 ATGAAGTGCTTGCGCTCAGGGGAGCCATTAGGAGGAGCAGATGAAATGTTTCCTTCATCTGAATCTCTTGCAACCAAGAATTTTTCAGCAAGTGGACATTCTTGCCTTGACAAGAAGCTGGACACTGGCAATATAGAAGAAGCTGAATCATCCTTGCGTGAGAGTGGTGTCCTGAACTATGAGGAAGCTAGAGCTCTGCTAGGAAGATATGAATATCAGAAAGGAAATTTTGTAGCTGCTTTACATGTCTTTGAGGGAATAGATATAAGTATTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAGCAGAGAACGCAATAAGAAACATTCCCATAATCATGCTGAACCGCAAATGTCTATACATGCTATCGGCTTACTATTGGAAGCAGTCTTCCTAAAAGCAAAATCTTTGCAGGTTCTTGAAAGGTTTAAAGAAGCTGCCCAATGTTGTAAAGTTATTCTGGACATAGTAGAGTCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCCTGAGCAAGGCAGTTGAGCTGCTACCAGAATTATGGAAACTTGCTGATTGTCCACGTCAAGCTATTTTGTCTTACCGACGAGCACTCCTTCATCAATGGAATCTTGACGTAGAGAATACAACAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTACATAGTGGAGGAGAAGCAGCACCCCCTAATCTCCGTTCTCAAATGGATGGCTCATTTGTACCTAGAAACAATATAGAAGAGGCTATACTTCTTTTAATGATTTTGTTAAGAAAAGTCTCTCTAAATAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTATTTCAGGAGATTTGACAGCTTTAGCCAATCAATTGGAAGAATTGCTCCCCGGGACTATCCCTCGGAGAGAAAGTTACCATTCTCTAGCTCTTTGTTATTATGGAGCAGGTAGGGACTTGGTAGCACTGGATCTTCTCAGAAAATTGCTGAGTAGTAGAGAGGACCCAAAACATGTTCCAGGTTTGTTAATGGCTTCTAAGTTATGTTCTGTGAACTCTAGTCTTGCAGAAGAAGGGGTAAGCTTTTCTCGCAGAGTGATTGAGAACTTGGATGGCAGATGTAATCAGTTAGAAAATGTTGCCAATTTCTTTCTTGGTGTTTCGCTTTCAGCACACTCAAAATTGGCCGTTTCTGATTCTGAGAGGTTTAAGAGACAATATGAAGCACTTCATGCCCTGGAAACTGCTAGCAGAATGACAAGAATGAGAGACCCCCTTGTACTATACCATCTCAGTTTAGAATATGCAGAGCAAAGGAAGTTGGATACTGCACTTTATTATACAAAGTGCTTTTTAAAACTGGAAGGTGGTTCTAATGTTAAAGGTTGGTTATTGTTAACTCGGATATTATCAGCTCAAAAACGGTTTTTGGATGCTGAATCTATTATCAATGCCGCTTTAGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCACTTAAGGAATGCCATTGAGACGTATACTCAGCTTCTTGCTGTTCTTCAAATTCTGAGTAAAAGTTTTGGTTCCGGGAAGAAGCTATATAAGGACAATAGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCACGATCTTGCTAATATATACATCAGTCTTTTACAGTGGCATGATGCGGAGGTGTGTCTTTCAAAATCTAAGGCCATCAAACCATACTCTGCTTCTAGATGTCATGCATTAGGTAGAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTCCGTGATGCTTTGGACATTGATCCTGGCCATGTCCTCAGCTTAATCTCCACCGCCGTAGTTCTTAGACGATGCAGTGATCAATCAAATCCTGCAGTAAGAATCTTTCTGATGGATGCAATACGGCATGATAGATTGAGTGCTTCTGCTTGGTATAATCTTGGCCTTCTTCACAAGGCTGAGGGTACAGTGTCATCATTAGTAGAAGCTACAGAATGTTTTCAGGCAGCACACTTTCTTGAAGAATCTGAACCGGTTGAAACTTTTAGATGA 2127 0.4067 MKCLRSGEPLGGADEMFPSSESLATKNFSASGHSCLDKKLDTGNIEEAESSLRESGVLNYEEARALLGRYEYQKGNFVAALHVFEGIDISIVTPKIKIALSRSRERNKKHSHNHAEPQMSIHAIGLLLEAVFLKAKSLQVLERFKEAAQCCKVILDIVESSLPEGLPDNFGAECKLQETLSKAVELLPELWKLADCPRQAILSYRRALLHQWNLDVENTTKIQKEFVVFLLHSGGEAAPPNLRSQMDGSFVPRNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSISGDLTALANQLEELLPGTIPRRESYHSLALCYYGAGRDLVALDLLRKLLSSREDPKHVPGLLMASKLCSVNSSLAEEGVSFSRRVIENLDGRCNQLENVANFFLGVSLSAHSKLAVSDSERFKRQYEALHALETASRMTRMRDPLVLYHLSLEYAEQRKLDTALYYTKCFLKLEGGSNVKGWLLLTRILSAQKRFLDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGHLRNAIETYTQLLAVLQILSKSFGSGKKLYKDNRDRARNLEVEIWHDLANIYISLLQWHDAEVCLSKSKAIKPYSASRCHALGRMYEAKGLYKEALKAFRDALDIDPGHVLSLISTAVVLRRCSDQSNPAVRIFLMDAIRHDRLSASAWYNLGLLHKAEGTVSSLVEATECFQAAHFLEESEPVETFR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2737g00029 708 PANTHER PROTEIN NPG1 1 708 IPR043376 -
Gabi2737g00029 708 SMART tpr_5 128 161 IPR019734 GO:0005515
Gabi2737g00029 708 SMART tpr_5 562 595 IPR019734 GO:0005515
Gabi2737g00029 708 SMART tpr_5 596 629 IPR019734 GO:0005515
Gabi2737g00029 708 SMART tpr_5 470 503 IPR019734 GO:0005515
Gabi2737g00029 708 SMART tpr_5 435 468 IPR019734 GO:0005515
Gabi2737g00029 708 SMART tpr_5 506 539 IPR019734 GO:0005515
Gabi2737g00029 708 SMART tpr_5 313 346 IPR019734 GO:0005515
Gabi2737g00029 708 SMART tpr_5 666 702 IPR019734 GO:0005515
Gabi2737g00029 708 Gene3D Tetratricopeptide repeat domain 401 539 IPR011990 GO:0005515
Gabi2737g00029 708 SUPERFAMILY TPR-like 129 534 IPR011990 GO:0005515
Gabi2737g00029 708 SUPERFAMILY TPR-like 507 680 IPR011990 GO:0005515
Gabi2737g00029 708 Gene3D Tetratricopeptide repeat domain 34 349 IPR011990 GO:0005515
Gabi2737g00029 708 Pfam Tetratricopeptide repeat 599 629 IPR013105 -
Gabi2737g00029 708 Gene3D Tetratricopeptide repeat domain 540 704 IPR011990 GO:0005515
Gabi2737g00029 708 ProSiteProfiles TPR repeat profile. 596 629 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2737g00029 Gabi-Chr2737 268252 275570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2737g00029 1 708 Calmodulin-binding Proteins AT4G28600 59.254 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2737g00029 K21843 - gmx:100800762 1176