Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2737g00012 ATGACGATGTTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGGATGAATTGGTGAGAAAAGGAATTTTAACTCCTTTTCATAAGCTGAAGGGTTTTGAGCGCCGCTTTCAACATCCTGAAACATCAAGTAGTAATAATGCAGCCGAGGATGAAAATATCAATGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCAATGTCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGCTGCTTGGGTCTGAAGCTGTACCGAAGCTTGATGCACCCACTTTTCCTTTTCGCAGGCTCAAGAAACCACTAATATTTCCCAAACCTGCAGATGGAGAGGTGGAGCCGAATAAAAGTTCAAAAAAGAAAAAGAGACGGCCTTTGCCTGGTAGGAAATGGACCAAGCATGTTTCTTGTGAAGATACACATCTGGAAGAAAGTCAAAGTGAAAATGCAAATGTTTGCTTGGACTCTTCCAGTTGTGAAAATTTAGAAGCACAAGATGTTGAACTTGCTGATCATGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTTTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGATCTGGTGGAATTATTGGCGATGAAATGGGTCTTGGTAAAACTGTCCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATCATTGTCTGTCCTGTTACACTATTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTGCTCCTAGAAAGAAGCGAGCTAAATCTGATGAAACAGACTGTGAAAGCAATAGTTCAAGTGATAATGATTATGAGAGAAGTTTGCCATCCAAAAGCACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCGGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGAGACCAGTTGCTTGACATCGAATGGGGCTACGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGTAAGCAGCTACAAACAGTACACCGCATCATAATGACTGGCGCACCTATTCAGAACAAACTGTCTGAGCTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTACTGCGTGATTTAATCATGCCCTATCTTCTCCGACGCATGAAGGCTGATGTGAATGCCCTACTTCCCAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACAGCTGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGACGTGGAGCAAATATTGGATGGACAAAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGGGAACATGCCTTCACGAATCCAGATTATGGAAATCCAGAACGGAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTTCTCAAACCCAACAGATGCTTGATATTTTTCAGAATTTCTTGACAACTTCTGGTCATGTTTACCGGAGAATGGATGGTCTCACTCCCATTAAACAAAGAATGGCTTTAATAGACGAATTTAATGCTTCAAGTGAGATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAGATAGGGTGATCATCTTCGACCCTGATTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGACGTGACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTATAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAAGATCTTTTCACACTGAAAGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAGTATTTTCAGTCAAATATCTGAAGAAGTAAATATCATTGGGACACAAAGAGATAATGAGGTTAACCATAAACATAGCCAAACTGCTGAACCGAGCTCTGAAGATGTTGCAGTTGGTAATGATGGCAAATCACAGAGAGGATCTTTACGGGGAAAGGGGAAAGAGAAAGTTGAAAGTAATAATGAGGTGGATGAGGAAACAAATATATTGAGAAGTCTTTTTGATGCCAACGGGATACATAGCGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCTTCCCAGGTTGCACAAAGAGCCTCGGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGATAGCATCTCTGTTCCAACGTGGACAGGAAGGTCGGGTACTGCTGGTGCACCGTCATCTGTTCAGCGGAAGTTTGGTTCAACTGTGAATCCCCAGCTGTTAAATAATAGCAAAGCATCTAATGAATTATCCAACCATGGACCTAACAAATTCAATGGACTTGCTGCTGGGGCATCCTCTGGTAAGGCATTATCTTCAGCTGAACTATTGGCTCGAATTCGAGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTTGAACATCAATTTGATATGGTGTCAATTTCCTCTAATCAAGCAAGATCAATAGATGTTCGATCTTCTAGGGCTATTGAAAATTCATCTGGGTCGCAACCTGAAGTATTGATTCGGAAAATATGTACCTTTCTAACACAGCAAGGTGGTAGTTCCAATTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATTCCCTCGAGAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCAGAAAGGACCAAATGGATCGCATTGGGTTCTGAAGCCAGACTATCAAGAATAG 3096 0.418 MTMLILMLFWMQPLQALLKQDELVRKGILTPFHKLKGFERRFQHPETSSSNNAAEDENINDLASSSVERAARSMSEAARARPTTKLLGSEAVPKLDAPTFPFRRLKKPLIFPKPADGEVEPNKSSKKKKRRPLPGRKWTKHVSCEDTHLEESQSENANVCLDSSSCENLEAQDVELADHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRSGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKRAKSDETDCESNSSSDNDYERSLPSKSTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNALLPKKTEHVLFCSLTAEQVSAYRAFLASTDVEQILDGQRNSLYGIDVMRKICNHPDLLEREHAFTNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFSQTQQMLDIFQNFLTTSGHVYRRMDGLTPIKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLKVDGETGSTETSSIFSQISEEVNIIGTQRDNEVNHKHSQTAEPSSEDVAVGNDGKSQRGSLRGKGKEKVESNNEVDEETNILRSLFDANGIHSAMNHDLIMNAHDEEKMRLEEQASQVAQRASEALRQSRMLRSHDSISVPTWTGRSGTAGAPSSVQRKFGSTVNPQLLNNSKASNELSNHGPNKFNGLAAGASSGKALSSAELLARIRGNQEKAIGAGLEHQFDMVSISSNQARSIDVRSSRAIENSSGSQPEVLIRKICTFLTQQGGSSNSASIVQYFKDRIPSRDLALFKNLLKEIATLQKGPNGSHWVLKPDYQE 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2737g00012 1031 SMART ultradead3 196 419 IPR014001 -
Gabi2737g00012 1031 CDD SF2_C_SNF 543 668 - -
Gabi2737g00012 1031 PANTHER SNF2/RAD54 FAMILY MEMBER 61 1012 - -
Gabi2737g00012 1031 CDD DEXHc_ERCC6 200 410 - -
Gabi2737g00012 1031 Pfam Helicase conserved C-terminal domain 550 657 IPR001650 -
Gabi2737g00012 1031 CDD CSB_WHD 963 1030 - -
Gabi2737g00012 1031 MobiDBLite consensus disorder prediction 285 301 - -
Gabi2737g00012 1031 Gene3D - 167 460 IPR038718 -
Gabi2737g00012 1031 MobiDBLite consensus disorder prediction 851 871 - -
Gabi2737g00012 1031 Pfam SNF2-related domain 203 525 IPR000330 GO:0005524|GO:0140658
Gabi2737g00012 1031 MobiDBLite consensus disorder prediction 113 139 - -
Gabi2737g00012 1031 MobiDBLite consensus disorder prediction 66 85 - -
Gabi2737g00012 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 461 IPR027417 -
Gabi2737g00012 1031 MobiDBLite consensus disorder prediction 285 314 - -
Gabi2737g00012 1031 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 411 IPR014001 -
Gabi2737g00012 1031 MobiDBLite consensus disorder prediction 771 787 - -
Gabi2737g00012 1031 MobiDBLite consensus disorder prediction 745 787 - -
Gabi2737g00012 1031 FunFam DNA excision repair protein ERCC-6 468 746 - -
Gabi2737g00012 1031 SMART helicmild6 574 657 IPR001650 -
Gabi2737g00012 1031 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 729 IPR027417 -
Gabi2737g00012 1031 Gene3D - 468 759 IPR027417 -
Gabi2737g00012 1031 Coils Coil 813 840 - -
Gabi2737g00012 1031 FunFam Protein CHROMATIN REMODELING 8 178 460 - -
Gabi2737g00012 1031 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 707 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2737g00012 Gabi-Chr2737 112691 118627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2737g00012 500 711 RAD5 or RAD16-like Gene Family AT5G22750 31.628 1.92e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2737g00012 SNF2_N 1.2e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2737g00012 K10841 - gmx:100820025 1752.26