Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2737g00011 ATGGAGGAAGAGCAGGATCGAATTTTGCTCACTAGTTTGGGCGTAAAATCTGCCAATCCCGAAGACATTGAGCGCGACGTTTTGGAAAAGGCTAGGAATGATGCAGTGATTGTTACTGAAGCTGAAGGGAGCACCAAGGAAGAGTGTTCTCATTTATCTGAAAATGTTGTTGATCCATCATCTATTTCCAAAGCAGAACTTCATCAGAAGTTGAGGGCAGTAGAATTTGAAATAGATGCCGTCGCTTCGACTATTCAGCCCTCGAGAAATGATGATAATAATGGAGAATGTAGTGATGTTGGTGAGGGAAGACCGGAGCAAGGGATTTCTGAGGGTGATTCCTCCGAGGAATTGAACCTTCAGCGTGTTCTCGCTGCCGATAGGTTGAGGAGCCTGAAGAACACTAAGGCTCAACTAGAGAAAGAGCTTTCAACCTTGTGTAAAGAGGATAAAGCTTCCCAAAGCGTCGAGCATGAAGAAAAAGTGATCTTGAGTTTAGTTAAGGAAGAGCGAAGGCCCAAGAGGCAGCTTAAAGAAGATAAAAAATCGCACAAAAGCTCAGGAAAGCGGCTTAAGAAAGTCTCATTTGATGACGATGTTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAATTGGTGAGAAAAGGAATTTTAACTCCTTTTCATAAGCTGAAGGGTTTTGAGCGCCGCTTTCAACATCCTGAAACATCAAGTAGTAATAATGCAGCCGAGGATGAAAATATCAATGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCAATGTCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGCTGCTTGGGTCTGAAGCTGTACCGAAGCTTGATGCACCCACTTTTCCTTTTCGCAGGCTCAAGAAACCACTAATATTTCCCAAACCTGCAGATGGAGAGGTGGAGCCGAATAAAAGTTCAAAAAAGAAAAAGAGACGGCCTTTGCCTGGTAGGAAATGGACCAAGCATGTTTCTTGTGAAGATACACATCTGGAAGAAAGTCAAAGTGAAAATGCAAATGTTTGCTTGGACTCTTCCAGTTGTGAAAATTTAGAAGCACAAGATGTTGAACTTGCTGATCATGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTTTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGATCTGGTGGAATTATTGGCGATGAAATGGGTCTTGGTAAAACTGTCCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATCATTGTCTGTCCTGTTACACTATTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTGCTCCTAGAAAGAAGCGAGCTAAATCTGATGAAACAGACTGTGAAAGCAATAGTTCAAGTGATAATGATTATGAGAGAAGTTTGCCATCCAAAAGCACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCGGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGAGACCAGTTGCTTGACATCGAATGGGGCTACGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGTAAGCAGCTACAAACAGTACACCGCATCATAATGACTGGCGCACCTATTCAGAACAAACTGTCTGAGCTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTACTGCGTGATTTAATCATGCCCTATCTTCTCCGACGCATGAAGGCTGATGTGAATGCCCTACTTCCCAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACAGCTGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGACGTGGAGCAAATATTGGATGGACAAAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGGGAACATGCCTTCACGAATCCAGATTATGGAAATCCAGAACGGAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTTCTCAAACCCAACAGATGCTTGATATTTTTCAGAATTTCTTGACAACTTCTGGTCATGTTTACCGGAGAATGGATGGTCTCACTCCCATTAAACAAAGAATGGCTTTAATAGACGAATTTAATGCTTCAAGTGAGATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAGATAGGGTGATCATCTTCGACCCTGATTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGACGTGACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTATAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAAGATCTTTTCACACTGAAAGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAGTATTTTCAGTCAAATATCTGAAGAAGTAAATATCATTGGGACACAAAGAGATAATGAGGTTAACCATAAACATAGCCAAACTGCTGAACCGAGCTCTGAAGATGTTGCAGTTGGTAATGATGGCAAATCACAGAGAGGATCTTTACGGGGAAAGGGGAAAGAGAAAGTTGAAAGTAATAATGAGGTGGATGAGGAAACAAATATATTGAGAAGTCTTTTTGATGCCAACGGGATACATAGCGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCTTCCCAGGTTGCACAAAGAGCCTCGGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGATAGCATCTCTGTTCCAACGTGGACAGGAAGGTCGGGTACTGCTGGTGCACCGTCATCTGTTCAGCGGAAGTTTGGTTCAACTGTGAATCCCCAGCTGTTAAATAATAGCAAAGCATCTAATGAATTATCCAACCATGGACCTAACAAATTCAATGGACTTGCTGCTGGGGCATCCTCTGGTAAGGCATTATCTTCAGCTGAACTATTGGCTCGAATTCGAGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTTGAACATCAATTTGATATGGTGTCAATTTCCTCTAATCAAGCAAGATCAATAGATGTTCGATCTTCTAGGGCTATTGAAAATTCATCTGGGTCGCAACCTGAAGTATTGATTCGGAAAATATGTACCTTTCTAACACAGCAAGGTGGTAGTTCCAATTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATTCCCTCGAGAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCAGAAAGGACCAAATGGATCGCATTGGGTTCTGAAGCCAGACTATCAAGAATAG 3690 0.4214 MEEEQDRILLTSLGVKSANPEDIERDVLEKARNDAVIVTEAEGSTKEECSHLSENVVDPSSISKAELHQKLRAVEFEIDAVASTIQPSRNDDNNGECSDVGEGRPEQGISEGDSSEELNLQRVLAADRLRSLKNTKAQLEKELSTLCKEDKASQSVEHEEKVILSLVKEERRPKRQLKEDKKSHKSSGKRLKKVSFDDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQHPETSSSNNAAEDENINDLASSSVERAARSMSEAARARPTTKLLGSEAVPKLDAPTFPFRRLKKPLIFPKPADGEVEPNKSSKKKKRRPLPGRKWTKHVSCEDTHLEESQSENANVCLDSSSCENLEAQDVELADHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRSGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKRAKSDETDCESNSSSDNDYERSLPSKSTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNALLPKKTEHVLFCSLTAEQVSAYRAFLASTDVEQILDGQRNSLYGIDVMRKICNHPDLLEREHAFTNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFSQTQQMLDIFQNFLTTSGHVYRRMDGLTPIKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLKVDGETGSTETSSIFSQISEEVNIIGTQRDNEVNHKHSQTAEPSSEDVAVGNDGKSQRGSLRGKGKEKVESNNEVDEETNILRSLFDANGIHSAMNHDLIMNAHDEEKMRLEEQASQVAQRASEALRQSRMLRSHDSISVPTWTGRSGTAGAPSSVQRKFGSTVNPQLLNNSKASNELSNHGPNKFNGLAAGASSGKALSSAELLARIRGNQEKAIGAGLEHQFDMVSISSNQARSIDVRSSRAIENSSGSQPEVLIRKICTFLTQQGGSSNSASIVQYFKDRIPSRDLALFKNLLKEIATLQKGPNGSHWVLKPDYQE 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2737g00011 1229 PANTHER SNF2/RAD54 FAMILY MEMBER 140 1210 - -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 1049 1069 - -
Gabi2737g00011 1229 SMART ultradead3 394 617 IPR014001 -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 84 117 - -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 969 985 - -
Gabi2737g00011 1229 CDD DEXHc_ERCC6 398 608 - -
Gabi2737g00011 1229 CDD CSB_WHD 1161 1228 - -
Gabi2737g00011 1229 FunFam DNA excision repair protein ERCC-6 666 944 - -
Gabi2737g00011 1229 Pfam SNF2-related domain 401 723 IPR000330 GO:0005524|GO:0140658
Gabi2737g00011 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 659 IPR027417 -
Gabi2737g00011 1229 Gene3D - 666 957 IPR027417 -
Gabi2737g00011 1229 Coils Coil 1011 1038 - -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 264 283 - -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 483 512 - -
Gabi2737g00011 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 926 IPR027417 -
Gabi2737g00011 1229 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 410 609 IPR014001 -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 943 985 - -
Gabi2737g00011 1229 CDD SF2_C_SNF 741 866 - -
Gabi2737g00011 1229 Gene3D - 365 658 IPR038718 -
Gabi2737g00011 1229 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 746 905 IPR001650 -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 311 339 - -
Gabi2737g00011 1229 MobiDBLite consensus disorder prediction 483 499 - -
Gabi2737g00011 1229 Pfam Helicase conserved C-terminal domain 748 855 IPR001650 -
Gabi2737g00011 1229 SMART helicmild6 772 855 IPR001650 -
Gabi2737g00011 1229 Coils Coil 122 149 - -
Gabi2737g00011 1229 FunFam Protein CHROMATIN REMODELING 8 376 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2737g00011 Gabi-Chr2737 112691 119485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2737g00011 698 909 RAD5 or RAD16-like Gene Family AT5G22750 31.628 3.77e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2737g00011 SNF2_N 1.7e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2737g00011 K10841 - gmx:100820025 2019.59