Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2737g00010 ATGGAGGAAGAGCAGGATCGAATTTTGCTCACTAGTTTGGGCGTAAAATCTGCCAATCCCGAAGACATTGAGCGCGACGTTTTGGAAAAGGCTAGGAATGATGCAGTGATTGTTACTGAAGCTGAAGGGAGCACCAAGGAAGAGTGTTCTCATTTATCTGAAAATGTTGTTGATCCATCATCTATTTCCAAAGCAGAACTTCATCAGAAGTTGAGGGCAGTAGAATTTGAAATAGATGCCGTCGCTTCGACTATTCAGCCCTCGAGAAATGATGATAATAATGGAGAATGTAGTGATGTTGGTGAGGGAAGACCGGAGCAAGGGATTTCTGAGGGTGATTCCTCCGAGGAATTGAACCTTCAGCGTGTTCTCGCTGCCGATAGGTTGAGGAGCCTGAAGAACACTAAGGCTCAACTAGAGAAAGAGCTTTCAACCTTGTGTAAAGAGGATAAAGCTTCCCAAAGCGTCGAGCATGAAGAAAAAGTGATCTTGAGTTTAGTTAAGGAAGAGCGAAGGCCCAAGAGGCAGCTTAAAGAAGATAAAAAATCGCACAAAAGCTCAGGAAAGCGGCTTAAGAAAGTCTCATTTGATGACGATGTTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGCTTTGTTGAAACAGAAAGGGATGAATTGGTGAGAAAAGGAATTTTAACTCCTTTTCATAAGCTGAAGGGTTTTGAGCGCCGCTTTCAACATCCTGAAACATCAAGTAGTAATAATGCAGCCGAGGATGAAAATATCAATGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCAATGTCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGCTGCTTGGGTCTGAAGCTGTACCGAAGCTTGATGCACCCACTTTTCCTTTTCGCAGGCTCAAGAAACCACTAATATTTCCCAAACCTGCAGATGGAGAGGTGGAGCCGAATAAAAGTTCAAAAAAGAAAAAGAGACGGCCTTTGCCTGGTAGGAAATGGACCAAGCATGTTTCTTGTGAAGATACACATCTGGAAGAAAGTCAAAGTGAAAATGCAAATGTTTGCTTGGACTCTTCCAGTTGTGAAAATTTAGAAGCACAAGATGTTGAACTTGCTGATCATGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCTGATAACATATTTGAAGCTTTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGATCTGGTGGAATTATTGGCGATGAAATGGGTCTTGGTAAAACTGTCCAGGTCTTATCATTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATCATTGTCTGTCCTGTTACACTATTGCGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACATGATTCTGCTCAAGATTCTGCTCCTAGAAAGAAGCGAGCTAAATCTGATGAAACAGACTGTGAAAGCAATAGTTCAAGTGATAATGATTATGAGAGAAGTTTGCCATCCAAAAGCACAAGAAAATGGGAATCCCTGATAAATCGTGTCATGAGATCGGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGAGACCAGTTGCTTGACATCGAATGGGGCTACGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTTTGTAAGCAGCTACAAACAGTACACCGCATCATAATGACTGGCGCACCTATTCAGAACAAACTGTCTGAGCTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAGTTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGCCTTACAGCTGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGACGTGGAGCAAATATTGGATGGACAAAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCTGACCTACTTGAAAGGGAACATGCCTTCACGAATCCAGATTATGGAAATCCAGAACGGAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTTCTCAAACCCAACAGATGCTTGATATTTTTCAGAATTTCTTGACAACTTCTGGTCATGTTTACCGGAGAATGGATGGTCTCACTCCCATTAAACAAAGAATGGCTTTAATAGACGAATTTAATGCTTCAAGTGAGATATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAGATAGGGTGATCATCTTCGACCCTGATTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGACGTGACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTATAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAAGATCTTTTCACACTGAAAGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAGTATTTTCAGTCAAATATCTGAAGAAGTAAATATCATTGGGACACAAAGAGATAATGAGGTTAACCATAAACATAGCCAAACTGCTGAACCGAGCTCTGAAGATGTTGCAGTTGGTAATGATGGCAAATCACAGAGAGGATCTTTACGGGGAAAGGGGAAAGAGAAAGTTGAAAGTAATAATGAGGTGGATGAGGAAACAAATATATTGAGAAGTCTTTTTGATGCCAACGGGATACATAGCGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCTTCCCAGGTTGCACAAAGAGCCTCGGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGATAGCATCTCTGTTCCAACGTGGACAGGAAGGTCGGGTACTGCTGGTGCACCGTCATCTGTTCAGCGGAAGTTTGGTTCAACTGTGAATCCCCAGCTGTTAAATAATAGCAAAGCATCTAATGAATTATCCAACCATGGACCTAACAAATTCAATGGACTTGCTGCTGGGGCATCCTCTGGTAAGGCATTATCTTCAGCTGAACTATTGGCTCGAATTCGAGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTTGAACATCAATTTGATATGGTGTCAATTTCCTCTAATCAAGCAAGATCAATAGATGTTCGATCTTCTAGGGCTATTGAAAATTCATCTGGGTCGCAACCTGAAGTATTGATTCGGAAAATATGTACCTTTCTAACACAGCAAGGTGGTAGTTCCAATTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATTCCCTCGAGAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCAGAAAGGACCAAATGGATCGCATTGGGTTCTGAAGCCAGACTATCAAGAATAG 3582 0.4202 MEEEQDRILLTSLGVKSANPEDIERDVLEKARNDAVIVTEAEGSTKEECSHLSENVVDPSSISKAELHQKLRAVEFEIDAVASTIQPSRNDDNNGECSDVGEGRPEQGISEGDSSEELNLQRVLAADRLRSLKNTKAQLEKELSTLCKEDKASQSVEHEEKVILSLVKEERRPKRQLKEDKKSHKSSGKRLKKVSFDDDVDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQHPETSSSNNAAEDENINDLASSSVERAARSMSEAARARPTTKLLGSEAVPKLDAPTFPFRRLKKPLIFPKPADGEVEPNKSSKKKKRRPLPGRKWTKHVSCEDTHLEESQSENANVCLDSSSCENLEAQDVELADHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLWELHCQRSGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDSAPRKKRAKSDETDCESNSSSDNDYERSLPSKSTRKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYSLTAEQVSAYRAFLASTDVEQILDGQRNSLYGIDVMRKICNHPDLLEREHAFTNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFSQTQQMLDIFQNFLTTSGHVYRRMDGLTPIKQRMALIDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLKVDGETGSTETSSIFSQISEEVNIIGTQRDNEVNHKHSQTAEPSSEDVAVGNDGKSQRGSLRGKGKEKVESNNEVDEETNILRSLFDANGIHSAMNHDLIMNAHDEEKMRLEEQASQVAQRASEALRQSRMLRSHDSISVPTWTGRSGTAGAPSSVQRKFGSTVNPQLLNNSKASNELSNHGPNKFNGLAAGASSGKALSSAELLARIRGNQEKAIGAGLEHQFDMVSISSNQARSIDVRSSRAIENSSGSQPEVLIRKICTFLTQQGGSSNSASIVQYFKDRIPSRDLALFKNLLKEIATLQKGPNGSHWVLKPDYQE 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2737g00010 1193 SMART ultradead3 394 617 IPR014001 -
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 84 117 - -
Gabi2737g00010 1193 Pfam Helicase conserved C-terminal domain 712 819 IPR001650 -
Gabi2737g00010 1193 CDD DEXHc_ERCC6 398 608 - -
Gabi2737g00010 1193 CDD SF2_C_SNF 705 830 - -
Gabi2737g00010 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 890 IPR027417 -
Gabi2737g00010 1193 Gene3D - 641 921 IPR027417 -
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 907 949 - -
Gabi2737g00010 1193 SMART helicmild6 736 819 IPR001650 -
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 483 512 - -
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 264 283 - -
Gabi2737g00010 1193 FunFam Protein CHROMATIN REMODELING 8 376 649 - -
Gabi2737g00010 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 869 IPR001650 -
Gabi2737g00010 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 410 609 IPR014001 -
Gabi2737g00010 1193 PANTHER SNF2/RAD54 FAMILY MEMBER 643 1174 - -
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 311 339 - -
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 933 949 - -
Gabi2737g00010 1193 CDD CSB_WHD 1125 1192 - -
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 483 499 - -
Gabi2737g00010 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 647 IPR027417 -
Gabi2737g00010 1193 Coils Coil 975 1002 - -
Gabi2737g00010 1193 Gene3D - 378 640 IPR038718 -
Gabi2737g00010 1193 Coils Coil 122 149 - -
Gabi2737g00010 1193 Pfam SNF2-related domain 401 636 IPR000330 GO:0005524|GO:0140658
Gabi2737g00010 1193 MobiDBLite consensus disorder prediction 1013 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2737g00010 Gabi-Chr2737 112691 119485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2737g00010 662 873 RAD5 or RAD16-like Gene Family AT5G22750 31.628 3.75e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2737g00010 SNF2_N 3e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2737g00010 K10841 - gmx:100820025 1932.15