Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2734g00010 ATGAGTCTTTTGGGGCTTCTCTTGGTGGGATTTCTCTCTTTGGGATCATCTGTCTATGCGTCCAGTGATGGTTGGATGAATGCTCATGCAACCTTCTATGGAGGGGGTGGGGCTTGTGGATATGGGAACTTGTATAGCCAGGGGTATGGGACTAACACTGCTGCTTTGAGCACGGCCTTGTTCAACAATGGTTTAAGTTGTGGGGCATGTTTTGAGATTAAGTGTGTTAATGACAAAAGGTGGTGCCTTACAAGCTCAATTGTGGTCACTGCCACCAATTTTTGCCCACCAAACAATGGATTACCAAATAATGCAGGTGGTTGGTGCAACCCTCCTCTTCACCATTTTGATCTTTCTCAACCTGTCTTTCAACACATAGCTCAATACAGAGCTGGAATAGTACCCGTGGCTTATCGAAGGGTCCCTTGCCAAAAGAGAGGTGGCATAAGATTCACCATCAACGGCCATTCTTACTTCAATCTAGTCCTAATTACCAACGTTGGTGGTGCTGGTGATGTTAATGCAGTTTCCATCAAAGGTTCAAGAACTAATTGGCAGCCAATGTCTAGAAACTGGGGTCAGAACTGGCAAAGCAACGCTTACCTCAATGGACAGAGCCTCTCCTTCAAGGTTACCACTAGCGACGGTCGAACCGTGGTCTCTTATAATGTTGCACCTGCTGGCTGGTCCTTTGGCCAAACCTTCACAGGCCTTCAATTTCCTTAA 726 0.4642 MSLLGLLLVGFLSLGSSVYASSDGWMNAHATFYGGGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDKRWCLTSSIVVTATNFCPPNNGLPNNAGGWCNPPLHHFDLSQPVFQHIAQYRAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVNAVSIKGSRTNWQPMSRNWGQNWQSNAYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTFTGLQFP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2734g00010 241 PANTHER EXPANSIN-A15 10 239 IPR002963 GO:0009664
Gabi2734g00010 241 SUPERFAMILY PHL pollen allergen 145 237 IPR036749 -
Gabi2734g00010 241 Pfam Lytic transglycolase 53 138 IPR009009 -
Gabi2734g00010 241 CDD DPBB_EXPA_N 24 143 - -
Gabi2734g00010 241 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Gabi2734g00010 241 Gene3D - 148 240 IPR036749 -
Gabi2734g00010 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 148 IPR007112 -
Gabi2734g00010 241 SMART dpbb_1 53 138 IPR007112 -
Gabi2734g00010 241 FunFam Expansin 148 240 - -
Gabi2734g00010 241 FunFam Expansin 15 144 - -
Gabi2734g00010 241 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Gabi2734g00010 241 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Gabi2734g00010 241 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Gabi2734g00010 241 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Gabi2734g00010 241 PRINTS Expansin/Lol pI family signature 35 53 IPR007118 GO:0005576
Gabi2734g00010 241 SUPERFAMILY Barwin-like endoglucanases 24 166 IPR036908 -
Gabi2734g00010 241 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 87 97 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 75 86 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 48 62 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Gabi2734g00010 241 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Gabi2734g00010 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Gabi2734g00010 241 Gene3D - 13 144 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2734g00010 Gabi-Chr2734 122797 124801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2734g00010 1 240 Expansin Gene Family AT2G03090 78.543 9.01e-144 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2734g00010 - K20628 tcc:18610379 432.95