Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2734g00008 ATGGGAAGAGTTAAACTGAGGATCAAGAAATTAGAGAGCACGAGTACCCGGCATGTGACTTATTCGAAGCGGAAAAGTGGAATATTAAAGAAAGCAAAGGAGCTATCAATATTATGTGATATTCATATTGCCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTGCTACAAGGACAGCGCAGTACTTTTGAGGAGGTCATTGCAAAATTTGCTCAACTTAACCCACAAGAAAGGGCCAAAAGGAAATTGGAAAACCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAGTACAAGATTTCTTGGGTTCAAGCAGTCAAATAGTGGAGGAATTAACTCATAAAGTGAGGATTCTACAAGCTCAACTTTCGGAAGTACATGAGAGACTGAGTTATTGGATTAATGTAGAGAAGATCAACAATTTAGAACATATTAGGCAAATAGAAGACTCACTCAGAGAATCAATTAATCGAGTGCATCTACAGAAGGAAAATATCAGAAAACACCAAATGATTTCACTTGAATGTGCAAGCCAGTTACAGGAAGGGATGAGTTTACCCCTGATGATGTCTGACGTGCAAGAATCCCAACACCTTCCTTGGCTTTTGACTAATGACAATCATCAATTGATGTTTCCCAGTGAACCAAATTTTCTGCCATTTCGATATAATCCCAATAGAGATGCTGAGTGCTCCCCTGATGTTTCACTGCCAGGCTATTCTGGTTATATTGGCAGCAATAAACTTGAGGTTAGTAGATCACCTCAAGTCTCTACATTGTGTCAGGGAGGTGGTGCATTGGATGAGTTAAATGGAGCTGCTTGCTTAGATGTACAACATTGTGAGCAGTTTGCATATCCTCCTCCACCAGATAATGAGCAAGTAAAGCATCACCCAGAGATGAATAGTAAACCAAACCCTGAGATTTACCAAGTTCATAATGGCTTTGATACTCCTAGACCACTGTTTGAGACTGGATATCAGTTCTGGAGTTCTGCTTCTGGGCCTTGCGGTATTGCAATGTATAATGAGAATGGCTACCATAGGGTAAGATGTCCTTTATTATATTCAATTTAG 1092 0.3965 MGRVKLRIKKLESTSTRHVTYSKRKSGILKKAKELSILCDIHIALLMFSPTGKPTLLQGQRSTFEEVIAKFAQLNPQERAKRKLENLEALKKTFKKLDHDVKVQDFLGSSSQIVEELTHKVRILQAQLSEVHERLSYWINVEKINNLEHIRQIEDSLRESINRVHLQKENIRKHQMISLECASQLQEGMSLPLMMSDVQESQHLPWLLTNDNHQLMFPSEPNFLPFRYNPNRDAECSPDVSLPGYSGYIGSNKLEVSRSPQVSTLCQGGGALDELNGAACLDVQHCEQFAYPPPPDNEQVKHHPEMNSKPNPEIYQVHNGFDTPRPLFETGYQFWSSASGPCGIAMYNENGYHRVRCPLLYSI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2734g00008 363 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Gabi2734g00008 363 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2734g00008 363 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi2734g00008 363 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Gabi2734g00008 363 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gabi2734g00008 363 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gabi2734g00008 363 Coils Coil 77 100 - -
Gabi2734g00008 363 Coils Coil 114 134 - -
Gabi2734g00008 363 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2734g00008 363 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2734g00008 363 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2734g00008 363 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Gabi2734g00008 363 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2734g00008 Gabi-Chr2734 64642 70660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2734g00008 1 303 Type I MADS-box Gene Family AT2G03060 46.562 4.58e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi2734g00008 SRF-TF 2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2734g00008 - - lang:109362237 552.747