Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2734g00004 ATGGGAAGAGTTAAACTGAGGATCAAGAAATTAGAGAGCACGAGTACCCGGCATGTGACTTATTCGAAGCGGAAAAGTGGAATATTAAAGAAAGCAAAGGAGCTATCAATATTATGTGATATTCATATTGCCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTGCTACAAGGACAGCGCAGGGGTGCCAATGGTCTAGTCTGTGGTTCACAAATTAAAAAAATCAAAACAAACCACCATTCGCTGTTTGGATCAGTTCCCTACCAGAGTACTTTTGAGGAGGTCATTGCAAAATTTGCTCAACTTAACCCACAAGAAAGGGCCAAAAGGAAATTGGAAAACCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAGTACAAGATTTCTTGGGTTCAAGCAGTCAAATAGTGGAGGAATTAACTCATAAAGTGAGGATTCTACAAGCTCAACTTTCGGAAGTACATGAGAGACTGAGTTATTGGATTAATGTAGAGAAGATCAACAATTTAGAACATATTAGGCAAATAGAAGACTCACTCAGAGAATCAATTAATCGAGTGCATCTACAGAAGGAAAATATCAGAAAACACCAAATGATTTCACTTGAATGTGCAAGCCAGTTACAGGAAGGGATGAGTTTACCCCTGATGATGTCTGACGTGCAAGAATCCCAACACCTTCCTTGGCTTTTGACTAATGACAATCATCAATTGATGTTTCCCAGTGAACCAAATTTTCTGCCATTTCGATATAATCCCAATAGAGATGCTGAGTGCTCCCCTGATGTTTCACTGCCAGGCTATTCTGGTTATATTGGCAGCAATAAACTTGAGGTTAGTAGATCACCTCAAGTCTCTACATTGTGTCAGGGAGGTGGTGCATTGGATGAGTTAAATGGAGCTGCTTGCTTAGATGTACAACATTGTGAGCAGTTTGCATATCCTCCTCCACCAGATAATGAGCAAGTAAAGCATCACCCAGAGATGAATAGTAAACCAAACCCTGAGATTTACCAAGTTCATAATGGCTTTGATACTCCTAGACCACTGTTTGAGACTGGATATCAGTTCTGGAGTTCTGCTTCTGGGCCTTGCGGTATTGCAATGTATAATGAGAATGGCTACCATAGGGTAAGATGTCCTTTATTATATTCAATTTAG 1179 0.3986 MGRVKLRIKKLESTSTRHVTYSKRKSGILKKAKELSILCDIHIALLMFSPTGKPTLLQGQRRGANGLVCGSQIKKIKTNHHSLFGSVPYQSTFEEVIAKFAQLNPQERAKRKLENLEALKKTFKKLDHDVKVQDFLGSSSQIVEELTHKVRILQAQLSEVHERLSYWINVEKINNLEHIRQIEDSLRESINRVHLQKENIRKHQMISLECASQLQEGMSLPLMMSDVQESQHLPWLLTNDNHQLMFPSEPNFLPFRYNPNRDAECSPDVSLPGYSGYIGSNKLEVSRSPQVSTLCQGGGALDELNGAACLDVQHCEQFAYPPPPDNEQVKHHPEMNSKPNPEIYQVHNGFDTPRPLFETGYQFWSSASGPCGIAMYNENGYHRVRCPLLYSI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2734g00004 392 Coils Coil 106 129 - -
Gabi2734g00004 392 Gene3D - 14 125 IPR036879 GO:0003677|GO:0046983
Gabi2734g00004 392 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Gabi2734g00004 392 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 232 - -
Gabi2734g00004 392 SUPERFAMILY SRF-like 1 56 IPR036879 GO:0003677|GO:0046983
Gabi2734g00004 392 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Gabi2734g00004 392 Coils Coil 143 163 - -
Gabi2734g00004 392 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2734g00004 392 CDD MADS 2 54 - -
Gabi2734g00004 392 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2734g00004 392 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2734g00004 392 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2734g00004 Gabi-Chr2734 64642 70660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2734g00004 1 332 Type I MADS-box Gene Family AT2G03060 42.693 6.47e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi2734g00004 SRF-TF 2.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2734g00004 - - lang:109362237 537.339