Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2730g00030 ATGGAGAGGATCGTTGGCGGAAAGTACAAGATTGGTCGGAAAATCGGTAGCGGCTCATTCGGTGAAATTTATATTGCCTCAAATATCGACACCTCTGAGATTGTCGCCGTTAAGATGGAAAACAAGAAGACCAAACATCCACAATTATTGTACGAGGCCAAGTTATACAATATTTTTCAAGGAGAAAGTGGTATTCCAAGTATGAAATGGTGTGGTACTGATGGAGATGATAATGTTCTAGCTATGGATCTTCTAGGAAGAAGTCTCGAGGACCTTTTTGTCTATTGTGGCAGGAAGTGTTCATTAAAAACAGTTTTGATGTTGGCCGATCAGATGCTTACAAGAATAGAGTACTTGCATTCCAAGGGATTTTTGCATAGGGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAAGCAAGTCAGGTTTACATTATTGATTTTGGACTTGCAAAAAGATATAGGGACCCTAACACAAACAAGCATATTCCTTACAGAGAAAATAAAAACTTAACAGGGACTGCGCGTTATGCAAGTTGCAATACTCACAAAGGAATTGAGCAAAGTCGTCGCGATGATTTGGAGTCTCTTGGATATGTTCTTATGTACTTTTTAAAAGGAAGCCTTCCTTGGCAGGGCCTGAAAGCTGTCAGCAAAAAAGAAAAATATGATAAGATTTGTGAGAAGAAGTTATCAACTCCCATTGAGATGCTTTGCAAGTCATTTCCCGTGGAGTTCGCTTCTTACTTTCATTATTGCCACTCTTTGACATTTGATCAACACCCAGATTATGGATACTTGAAGCGCCTGTTTCGTGATTTGTTCACTCGTGAAGGATATGATTCTGACAATGTATTTGACTGGACCGTCCTAAAATATCAGCAGAGGCAACAGACAGAGAGACAAAATCAATCATCTCCTTCAGCTGCTGTGCCTAGCAGTCTAGAACCAGTGGTTGTGGATAAGCATAAAGGAGTCAATGATTCAGCTCAAATTAGTGTAACAAAACTGTTAGCCAATCTTGATCCACCAAGTGCACGTGTGCAGCCTAAGCCATCTAATGTTCGGAATCTGAATGCCAAGAATCAGACCGAGAAACATAATGTGAACAATGGTCCATCTACTTCATCTGCAATGCCCAGTTCCTCTACAGAAAATGTCTCAAAACCTGCAACCTCAAACCTGGGTCGTGTATTTGGGAGTAATCCTCGTGCTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCAACCAAATAG 1269 0.409 MERIVGGKYKIGRKIGSGSFGEIYIASNIDTSEIVAVKMENKKTKHPQLLYEAKLYNIFQGESGIPSMKWCGTDGDDNVLAMDLLGRSLEDLFVYCGRKCSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKASQVYIIDFGLAKRYRDPNTNKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLMYFLKGSLPWQGLKAVSKKEKYDKICEKKLSTPIEMLCKSFPVEFASYFHYCHSLTFDQHPDYGYLKRLFRDLFTREGYDSDNVFDWTVLKYQQRQQTERQNQSSPSAAVPSSLEPVVVDKHKGVNDSAQISVTKLLANLDPPSARVQPKPSNVRNLNAKNQTEKHNVNNGPSTSSAMPSSSTENVSKPATSNLGRVFGSNPRASSSWIPSLRRISSTK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2730g00030 422 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gabi2730g00030 422 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gabi2730g00030 422 Pfam Protein kinase domain 9 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2730g00030 422 MobiDBLite consensus disorder prediction 352 422 - -
Gabi2730g00030 422 SMART serkin_6 9 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2730g00030 422 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2730g00030 422 FunFam Casein kinase I isoform delta-like 1 339 - -
Gabi2730g00030 422 Gene3D Transferase(Phosphotransferase) domain 1 1 334 - -
Gabi2730g00030 422 MobiDBLite consensus disorder prediction 345 422 - -
Gabi2730g00030 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gabi2730g00030 422 PANTHER CASEIN KINASE-RELATED 7 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2730g00030 Gabi-Chr2730 350476 356686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2730g00030 9 236 AGC Kinase Gene Family AT3G08720 26.496 5.15e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi2730g00030 Pkinase 4.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2730g00030 K08960 - gmx:100792736 736.487