Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2730g00025 ATGGGTAATATCCTCTATAAGAACCGTTGGCTAGTGTCCATGATGATTCTTTCTCTCCTCTTCAACGTTCAAGCCCAAGACATTTTTGTACAGAACAGGCCAGAATTGCCACAAACTATTCATCCGAGCAAAGGGATTGTGATCACAGTCCTGTCCATAATGTTTACCATAACATTTCTCTTACTTGCCTATGTGAAATTCTGTCGAGATATTCCTCGTGAACTTCTGAACCAAAATCAAAACTTTCATGGACTAACTCGATCAAGGTCTAGGTTTTCTGGGATTGACAGACAAGTAATTGAAACTCTCCCTTTCTTCAAGTTTTCTTCCCTCAAGGGATCCAAAGAAGGCCTTGAATGTACCGTTTGCTTATCCGAATTCGAGGACATAGAGATTCTTAGATTGCTACCAAAGTGCCAGCACGCTTTCCACGTGAATTGCATTGACAAGTGGCTTGAAAACCACTCTACATGCCCTCTTTGCAGGTACAGGGTTGAACCAGGGGACATCAAGAACCTTACTTATTCGTTGAGCTCAAGGTCCCTCCGAGGTCCTTCAAATCTAAATGAGGACCCAAATCTTGAATTCTTTGTCCAGAGAGAGCCATCCCATCGAGGGTCATCAGGATTTGACACTGGAAGTGCCTTTTGGGATAGCAGTGGTGGTACAAAGTGGGAACATGTTCACGAACTCAATCATAAAATAGTCATCTCTGATGTTGTTACGAGGAGCAGGTGGAGTGATCTTAATTCTTCAGACCTTCTATCCTTGAACTGTGAGATGATTCATGATATGTGCAGCACAAGATTCTCTCCTTTGGAAAACACCAGAAATGAAAAGTTTCACGGAACTTCAAGCCTTCCTTCTACTTCCAATGAGGAAGAAAATTCATTTACGGCACTAAATTCTACTGAGAAGAGGTCCATGTCTGACATTGCTAATGTTCCAAGGTTTGCAGAAATCAACAAGCAGAATAGAATCAGAGAATATGTGGCATCTAGTGGGGACAATAGGAGCGAAGAGAGGTTGTGCAGGATTTGGTTGCCAATTGCAAGGCGAACAGTCCAATGGATTGCAAGACAAGAAAGAAATTCAGTTGAATTAGAACACAAACCTTTAGCTTCAAACGTTTGA 1134 0.4198 MGNILYKNRWLVSMMILSLLFNVQAQDIFVQNRPELPQTIHPSKGIVITVLSIMFTITFLLLAYVKFCRDIPRELLNQNQNFHGLTRSRSRFSGIDRQVIETLPFFKFSSLKGSKEGLECTVCLSEFEDIEILRLLPKCQHAFHVNCIDKWLENHSTCPLCRYRVEPGDIKNLTYSLSSRSLRGPSNLNEDPNLEFFVQREPSHRGSSGFDTGSAFWDSSGGTKWEHVHELNHKIVISDVVTRSRWSDLNSSDLLSLNCEMIHDMCSTRFSPLENTRNEKFHGTSSLPSTSNEEENSFTALNSTEKRSMSDIANVPRFAEINKQNRIREYVASSGDNRSEERLCRIWLPIARRTVQWIARQERNSVELEHKPLASNV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2730g00025 377 FunFam RING-H2 finger protein ATL43 95 169 - -
Gabi2730g00025 377 SUPERFAMILY RING/U-box 97 166 - -
Gabi2730g00025 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 32 363 - -
Gabi2730g00025 377 Pfam Ring finger domain 119 162 IPR001841 -
Gabi2730g00025 377 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Gabi2730g00025 377 CDD RING-H2_EL5-like 119 162 - -
Gabi2730g00025 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 169 IPR013083 -
Gabi2730g00025 377 MobiDBLite consensus disorder prediction 277 297 - -
Gabi2730g00025 377 SMART ring_2 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2730g00025 Gabi-Chr2730 303564 304998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2730g00025 42 364 C3H Transcription Factor Family AT2G20030 40.634 2.98e-76 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2730g00025 K10664 - gmx:100816668 456.447