Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2730g00017 ATGAGTGTTGAACCCCAGAATTCTGAGACCGAGTGCAGCTCAAACTCATCTCCACCAACGTCACCATCATCATCCTATCCCCCTTCAACACGTGCTGATCTCAAAAACCCTGTTGACCCAGAATCCAAAAAGATAAGACGCATTCGAGACTCCAACAAGCACGCTCTGTATCGTGGGGTTCGTATGCGAAACTGGGGCAAATGGGTGTCAGAAATTCGGGAACCACGCAAGAAATCACGCATATGGTTAGGCACATTCCCAACACCAGAAATGGCAGCGAGAGCACACGATGTAGCTGCTCTGAGCATCAAGGGTGACTCTGCCATTCTCAACTTCCCTGAGCTTTCAAACTTGCTGCCACGCCCTGCATCACTTGCTCCACGTGATGTCCAAGCTGCGGCAGCAAAAGCTGCTCGCATGGACAAGTTCGACTTGCTTCCATCTTCAACAACATATTCTAATGCTTCCGATGAACTGTGTGAGATAATAGAGCTTCCCAGGTTGGAAAACAGTGATGAGACTCTGGAACTTGAAAAGGAGTTTGTGTTCATGGACTCGTTAGATGGCTGGATGTATCAGCCACCGTGGTTGCAGAGCATGGAAGAACTTGGAGTCCCAGAGAGTGAGGTTCTAACTAGTTTTGAGAGTTTGATGTGGAATAATTACTAA 669 0.4783 MSVEPQNSETECSSNSSPPTSPSSSYPPSTRADLKNPVDPESKKIRRIRDSNKHALYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGDSAILNFPELSNLLPRPASLAPRDVQAAAAKAARMDKFDLLPSSTTYSNASDELCEIIELPRLENSDETLELEKEFVFMDSLDGWMYQPPWLQSMEELGVPESEVLTSFESLMWNNY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2730g00017 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 175 - -
Gabi2730g00017 222 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gabi2730g00017 222 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Gabi2730g00017 222 MobiDBLite consensus disorder prediction 1 31 - -
Gabi2730g00017 222 Pfam AP2 domain 57 105 IPR001471 GO:0003700|GO:0006355
Gabi2730g00017 222 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Gabi2730g00017 222 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Gabi2730g00017 222 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Gabi2730g00017 222 MobiDBLite consensus disorder prediction 1 43 - -
Gabi2730g00017 222 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Gabi2730g00017 222 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Gabi2730g00017 222 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2730g00017 Gabi-Chr2730 214246 215216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2730g00017 35 202 AP2-EREBP Transcription Factor Family AT5G11590 57.895 4.08e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2730g00017 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2730g00017 K09286 - qsa:O6P43_015497 266.544