Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2730g00013 ATGGGCCGTATTCCATGCTGTGAGAAGGATAACGTAAAAAGAGGGCAGTGGACACCTGAGGAAGATAACAAGCTCTCTTCCTACATTTCTCTACATGGAACTCGCAACTGGCGTCTCATCCCCAAGAATGCTGGCCTCCAGAGATGTGGCAAGAGCTGCCGGCTAAGGTGGACTAATTATCTTCGTCCTGATCTTAAACATGGACAATTCTCGGATTCAGAAGAACAAACTATTGTGAAGCTTCATTCAGTTTTTGGTAACAGATGGTCATTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCACTGGAACACCAAGCTAAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTCACCCACAAGCCATTCTCTCATCTAATGGCTGAAATTGCCAACACATTGGCACCACCACAGGCAGCTCACCTAGCTGAAGCAGCCCTCGGCTGCTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAATTAACTTCCAGGGCCAACATTCGACTGCAACACTGGCGAATAACATCACCGATTACATTAATTTTAAGCCAGAAGAAAAGGACGACACTGTTGAGAAGATTAAGCTTGACCTGTCAAAGGCCATACAACAAGAACCTGAAATGATACACTCAAATAAACCTTGGGACTCCACTGCAGCAACATCTGCATGTTTTGCAATGCCATACAGTGTTTTTCCAACAATGCCTGGGTTTCAATTTAGTCCAGCATCTTTTGGCAATAAAGAGGATGCATCACCATGGAGCCAAAGTGTATGTACTGGAAGCACATGCACAGCCATGGATCAGCAAAACCAGTTGCATGAAAAACTTGAAGAAGAAAATGGGGACGATTCTGAGGCTACAAAGGAAATTAGAAATCTATCAAATATATTCAACCCGGACTGCGTCGTTTGGGATTTACCAGCAGATGATTTAATTAACCACATGGTATAA 978 0.4438 MGRIPCCEKDNVKRGQWTPEEDNKLSSYISLHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIANTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFQGQHSTATLANNITDYINFKPEEKDDTVEKIKLDLSKAIQQEPEMIHSNKPWDSTAATSACFAMPYSVFPTMPGFQFSPASFGNKEDASPWSQSVCTGSTCTAMDQQNQLHEKLEEENGDDSEATKEIRNLSNIFNPDCVVWDLPADDLINHMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2730g00013 325 Gene3D - 69 128 - -
Gabi2730g00013 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2730g00013 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi2730g00013 325 FunFam transcription factor MYB80 69 129 - -
Gabi2730g00013 325 PANTHER F14D16.11-RELATED 1 322 - -
Gabi2730g00013 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2730g00013 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi2730g00013 325 CDD SANT 17 61 IPR001005 -
Gabi2730g00013 325 CDD SANT 70 112 IPR001005 -
Gabi2730g00013 325 FunFam Transcription factor RAX3 7 67 - -
Gabi2730g00013 325 SMART sant 66 114 IPR001005 -
Gabi2730g00013 325 SMART sant 13 63 IPR001005 -
Gabi2730g00013 325 Gene3D - 14 66 - -
Gabi2730g00013 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi2730g00013 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2730g00013 325 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2730g00013 Gabi-Chr2730 139817 141028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2730g00013 1 325 MYB Transcription Factor Family AT5G56110 56.305 2.64e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2730g00013 Myb_DNA-binding 5e-15 CL0123