Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2730g00002 ATGGTTGTCCAGCCGACAGTAAGATTGCATGTGTTGGGATCTGAAGATATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATCCGCATTCCTTTCAACCTAGCAATGTTTATTCTGAACCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCCCAAGCAATGTCTGGGGCAAATGCATCCCATTCATCCTCTCTTGAATGCCCGAATGGTGATTCAGAATCCAATGAAGAAGGCCAGTCTTTGGCCAATAGTGGGTTGAATGAGGAAGATGATGATGCAACTAAGGATTCACAGCCTGCTGCTCCTAATCAATCAGGAAATGATGGGCTAGAACACCAAGGGATGCAGCGTACTTCATCATCTGCACCTTCCATGCGTGAAGAGTGCCTTACTCAGACGCCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATACTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCAGGCCAGAATGCCTTTGCCCCTTGAGATGACGCAGGAGCCTGTTTATGTAAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTAATAAAAGCTAGAAAGCCGTATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACTGGAGGACGTTTTGCAAAGAAAAGTGACACTGAGGCCTCAAACAACTCAGGCAAGGAAAAGGATCATGGTTCTGGTCCAGTCCTGTCATCACAATCAATTAGTTCATCTGGTTCTGAACCATTACCTTCTGACACTGCTGAAACTTGGAATTCTCCCAACATGCAACAAGATGCAAGGGGATCAAAAGCACATGACAGATTTGAAGCACCCAATTATGAAAATGATAGAGGATCCTACCATGGACATAATGGTATGCAGTCTTCAATGTATACCTCAGGTGAAAGAGTGGAGGAAGGGGATTGTTCAGGTCAGCAAAGGGGAAGCATCTCTTCGAAGCACGCTTCACATAGGCGTGTTACTATTCAGTAG 1098 0.4627 MVVQPTVRLHVLGSEDMQSKSETANRLRSDPHSFQPSNVYSEPWWRGIGYNPMAQAMSGANASHSSSLECPNGDSESNEEGQSLANSGLNEEDDDATKDSQPAAPNQSGNDGLEHQGMQRTSSSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPQARMPLPLEMTQEPVYVNAKQYQGILRRRQARAKAELERKLIKARKPYLHESRHQHAMRRARGTGGRFAKKSDTEASNNSGKEKDHGSGPVLSSQSISSSGSEPLPSDTAETWNSPNMQQDARGSKAHDRFEAPNYENDRGSYHGHNGMQSSMYTSGERVEEGDCSGQQRGSISSKHASHRRVTIQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2730g00002 365 ProSiteProfiles NF-YA/HAP2 family profile. 190 250 IPR001289 GO:0003700|GO:0006355
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 100 133 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 268 301 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 225 244 - -
Gabi2730g00002 365 ProSitePatterns NF-YA/HAP2 subunit signature. 195 215 IPR018362 GO:0003677|GO:0016602
Gabi2730g00002 365 PRINTS CCAAT-binding transcription factor subunit B signature 193 215 IPR001289 GO:0003700|GO:0006355
Gabi2730g00002 365 PRINTS CCAAT-binding transcription factor subunit B signature 224 247 IPR001289 GO:0003700|GO:0006355
Gabi2730g00002 365 SMART cbf3 189 250 IPR001289 GO:0003700|GO:0006355
Gabi2730g00002 365 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 29 306 IPR001289 GO:0003700|GO:0006355
Gabi2730g00002 365 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 192 247 IPR001289 GO:0003700|GO:0006355
Gabi2730g00002 365 Gene3D - 190 252 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 58 133 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 225 365 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 346 365 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 58 90 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 13 42 - -
Gabi2730g00002 365 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2730g00002 Gabi-Chr2730 10710 15792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2730g00002 32 294 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.759 1.43e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2730g00002 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2730g00002 K08064 - gmx:100808378 583.563