Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2730g00001 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATCCGCATTCCTTTCAACCTAGCAATGTTTATTCTGAACCTTGGTGGCGTGGTATTGGGTACAATCCCATGGCCCAAGCAATGTCTGGGGCAAATGCATCCCATTCATCCTCTCTTGAATGCCCGAATGGTGATTCAGAATCCAATGAAGAAGGCCAGTCTTTGGCCAATAGTGGGTTGAATGAGGAAGATGATGATGCAACTAAGGATTCACAGCCTGCTGCTCCTAATCAATCAGGAAATGATGGGCTAGAACACCAAGGGATGCAGCGTACTTCATCATCTGCACCTTCCATGCGTGAAGAGTGCCTTACTCAGACGCCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCATACTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCAGGCCAGAATGCCTTTGCCCCTTGAGATGACGCAGGAGCCTGTTTATGTAAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTAATAAAAGCTAGAAAGCCGTATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACTGGAGGACGTTTTGCAAAGAAAAGTGACACTGAGGCCTCAAACAACTCAGGCAAGGAAAAGGATCATGGTTCTGGTCCAGTCCTGTCATCACAATCAATTAGTTCATCTGGTTCTGAACCATTACCTTCTGACACTGCTGAAACTTGGAATTCTCCCAACATGCAACAAGATGCAAGGGGATCAAAAGCACATGACAGATTTGAAGCACCCAATTATGAAAATGATAGAGGATCCTACCATGGACATAATGGTATGCAGTCTTCAATGTATACCTCAGGTGAAAGAGTGGAGGAAGGGGATTGTTCAGGTCAGCAAAGGGGAAGCATCTCTTCGAAGCACGCTTCACATAGGCGTGTTACTATTCAGTAG 1050 0.4629 MQSKSETANRLRSDPHSFQPSNVYSEPWWRGIGYNPMAQAMSGANASHSSSLECPNGDSESNEEGQSLANSGLNEEDDDATKDSQPAAPNQSGNDGLEHQGMQRTSSSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPQARMPLPLEMTQEPVYVNAKQYQGILRRRQARAKAELERKLIKARKPYLHESRHQHAMRRARGTGGRFAKKSDTEASNNSGKEKDHGSGPVLSSQSISSSGSEPLPSDTAETWNSPNMQQDARGSKAHDRFEAPNYENDRGSYHGHNGMQSSMYTSGERVEEGDCSGQQRGSISSKHASHRRVTIQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 286 302 - -
Gabi2730g00001 349 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 84 117 - -
Gabi2730g00001 349 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Gabi2730g00001 349 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Gabi2730g00001 349 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 14 290 IPR001289 GO:0003700|GO:0006355
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 209 228 - -
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 252 285 - -
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 1 117 - -
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 40 74 - -
Gabi2730g00001 349 Gene3D - 174 236 - -
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 209 349 - -
Gabi2730g00001 349 MobiDBLite consensus disorder prediction 330 349 - -
Gabi2730g00001 349 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Gabi2730g00001 349 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Gabi2730g00001 349 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2730g00001 Gabi-Chr2730 10255 15792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2730g00001 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.759 6.58e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2730g00001 CBFB_NFYA 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2730g00001 K08064 - gmx:100808378 583.563